Isolation, draft genome sequencing and identification of Enterobacter roggenkampii CCI9 [0.03%]
分离、基因组测序及报道肠杆菌属 Roggenkampii 种CCI9菌株
Hironaga Akita,Yuya Itoiri,Noriyo Takeda et al.
Hironaga Akita et al.
Strain CCI9, which was isolated from leaf soil collected in Japan, was capable of growth on poor-nutrient medium, at temperatures of 10°C to 45°C, at pHs of 4.5 to 10, and in the presence of 7.0% NaCl. We determined a draft genome sequenc...
Draft Genome Sequences for the Frankia sp. strains CgS1, CcI156 and CgMI4, Nitrogen-Fixing Bacteria Isolated from Casuarina sp. in Egypt [0.03%]
来自埃及肉豆蔻属植物的固氮细菌CgS1，CcI156和CgMI4株Frankia sp.的草图基因组序列
Samira Mansour,Erik Swanson,Céline Pesce et al.
Samira Mansour et al.
Frankia sp. strains CgS1, CcI156 and CgMI4 were isolated from Casuarina glauca and C. cunninghamiana nodules. Here, we report the 5.26-, 5.33- and 5.20-Mbp draft genome sequences of Frankia sp. strains CgS1, CcI156 and CgMI4, respectively. ...
Nucleotide sequencing of the HoxA gene cluster using Gorilla fosmid clones [0.03%]
使用 gorilla fosmid 克隆对HoxA基因簇进行核苷酸序列测定
Takashi Kitano,Choong-Gon Kim,Naruya Saitou
Takashi Kitano
We sequenced the western gorilla (Gorilla gorilla) HoxA cluster region using seven fosmid clones, and found that the total tiling path sequence was 214,185 bp from the 5' non-genic region of HoxA1 to the 3' non-genic region of Evx1. We comp...
Draft genome sequence of multi-resistant Salmonella enterica subsp. enterica serovar Rissen strain 19CS0416 isolated from Vietnam reveals mcr-1 plasmid mediated resistance to colistin already in 2013 [0.03%]
来自越南的多重耐药沙门氏菌肠亚种血清型Rissen菌株19CS0416的草图基因组序列揭示了早在2013年就已经存在由mcr-1质粒介导的对多粘菌素的抗性
Belen Gonzalez-Santamarina,Anne Busch,Silvia Garcia-Soto et al.
Belen Gonzalez-Santamarina et al.
We report the first draft genome sequence of a Salmonella strain with plasmid-mediated resistance to colistin encoded by mcr-1 gene in Vietnam. Salmonella enterica subsp. enterica serovar Rissen was isolated from a Vietnamese pig slaughterh...
Complete genome and plasmid sequences of a multidrug-resistant Salmonella enterica subsp. enterica serovar Panama isolate from a German cattle farm [0.03%]
来自德国奶牛场的多重耐药性鼠伤寒沙门氏菌泛美血清型分离株的完整基因组和质粒序列
Anne Busch,Helmut Hotzel,Ulrich Methner
Anne Busch
We describe a rare isolate of Salmonella enterica subsp. enterica serovar Panama with an extended-spectrum β-lactamase (ESBL) profile from a German cattle-fattening farm. Applying two next-generation sequencing methods we generated sequenc...
crispRdesignR: A Versatile Guide RNA Design Package in R for CRISPR/Cas9 Applications [0.03%]
crispRdesignR：一个用于CRISPR / Cas9应用的强大的向导RNA设计包
Dylan Beeber,Frédéric Jj Chain
Dylan Beeber
The success of CRISPR/Cas9 gene editing applications relies on the efficiency of the single guide RNA (sgRNA) used in conjunction with the Cas9 protein. Current sgRNA design software vary in the details they provide on sgRNA sequence effici...
Draft genome sequence of Actinomadura sp. K4S16 and elucidation of the nonthmicin biosynthetic pathway [0.03%]
链霉菌放线 madura 拟素基因组序列的草图和非拟霉素生物合成途径的阐明
Hisayuki Komaki,Enjuro Harunari,Natsuko Ichikawa et al.
Hisayuki Komaki et al.
Actinomadura sp. K4S16 (=NBRC 110471) is a producer of a novel tetronate polyether compound nonthmicin. Here, we report the draft genome sequence of this strain together with features of the organism and assembly, annotation and analysis of...
Complete Genome Sequence of Leptospira interrogans Strains FMAS_KW1, FMAS_KW2 and FMAS_AW1 Isolated from Leptospirosis Patients from Karawanalla and Awissawella, Sri Lanka [0.03%]
从斯里兰卡Karawanalla和Awissawella地区分离的致病钩端螺旋体FMAS_KW1、FMAS_KW2和FMAS_AW1株的基因组序列
Indika Senevirathna,Dinesha Jayasundara,Joshua P Lefler et al.
Indika Senevirathna et al.
Leptospirosis is an important cause of acute undifferentiated fever and complex multisystem febrile diseases in the tropics and subtropics. Understanding the evolution of Leptospira especially as related to the clinical pathogenesis of lept...
A detailed characteristics of bias associated with long runs of homozygosity identification based on medium density SNP microarrays [0.03%]
基于中密度SNP微阵的长段纯合身份鉴定的相关偏差特征分析
Tomasz Szmatoła,Artur Gurgul,Igor Jasielczuk et al.
Tomasz Szmatoła et al.
In the present study, runs of homozygosity (ROH) detected with the use of a standard bovine 54k single nucleotide polymorphism (SNP) genotyping assay and two different ROH detection approaches, based on 50 (M1) or 15 (M2) consecutive SNPs, ...
Draft Genome Sequences of Bifidobacterium animalis Consecutively Isolated from Healthy Japanese Individuals [0.03%]
健康日本人体内连续分离的动物双歧杆菌基因组草图序列发布公告
Tomoya Tsukimi,Tsubasa Watabe,Kazuki Tanaka et al.
Tomoya Tsukimi et al.
Bifidobacterium species are well recognized as probiotics and colonized in various parts of the human body. Here, we report the draft genome sequences of Bifidobacterium animalis isolated from two healthy Japanese volunteers, one of which w...