nf-LO: A Scalable, Containerized Workflow for Genome-to-Genome Lift Over [0.03%]
NF-LO：一种可扩展的、基于容器化的端到端基因组liftOver工作流解决方案
Andrea Talenti,James Prendergast
Andrea Talenti
The increasing availability of new genome assemblies often comes with a paucity of associated genomic annotations, limiting the range of studies that can be performed. A common workaround is to lift over annotations from better annotated ge...
Chromosome-Level Genome Assembly of Chinese Sucker (Myxocyprinus asiaticus) Reveals Strongly Conserved Synteny Following a Catostomid-Specific Whole-Genome Duplication [0.03%]
中国肺鱼染色体水平基因组组装揭示了一次本底特须鱼全基因组加倍事件后的强保守同线性关系
Trevor J Krabbenhoft,Daniel J MacGuigan,Nathan J C Backenstose et al.
Trevor J Krabbenhoft et al.
Fishes of the family Catostomidae ("suckers"; Teleostei: Cypriniformes) are hypothesized to have undergone an allopolyploidy event approximately 60 Ma. However, genomic evidence has previously been unavailable to assess this hypothesis. We ...
Molecular Evolution of Ultraviolet Visual Opsins and Spectral Tuning of Photoreceptors in Anemonefishes (Amphiprioninae) [0.03%]
clownfish视蛋白分子进化及其光受体的谱峰移动
Laurie J Mitchell,Karen L Cheney,Martin Lührmann et al.
Laurie J Mitchell et al.
Many animals including birds, reptiles, insects, and teleost fishes can see ultraviolet (UV) light (shorter than 400 nm), which has functional importance for foraging and communication. For coral reef fishes, shallow reef environments trans...
Overdominant Mutations Restrict Adaptive Loss of Heterozygosity at Linked Loci [0.03%]
上位性突变限制了连锁座位的适应性杂合子丢失现象
Kaitlin J Fisher,Ryan C Vignogna,Gregory I Lang
Kaitlin J Fisher
Loss of heterozygosity is a common mode of adaptation in asexual diploid populations. Because mitotic recombination frequently extends the full length of a chromosome arm, the selective benefit of loss of heterozygosity may be constrained b...
The "Bipartite" Structure of the First Genome of Ampelomyces quisqualis, a Common Hyperparasite and Biocontrol Agent of Powdery Mildews, May Point to Its Evolutionary Origin from Plant Pathogenic Fungi [0.03%]
葡萄座壳孢（一种常见的半锈病和生物防治剂）的第一个基因组的“二分”结构可能指向其从植物病原真菌进化而来的起源
Lauren Huth,Gavin J Ash,Alexander Idnurm et al.
Lauren Huth et al.
Powdery mildews are among the most important plant pathogens worldwide, which are often attacked in the field by mycoparasitic fungi belonging to the genus Ampelomyces. The taxonomy of the genus Ampelomyces is unresolved, but well-supported...
The Evolution of Comparative Phylogeography: Putting the Geography (and More) into Comparative Population Genomics [0.03%]
comparative phylogeography的演变：把地理学（以及更多内容）纳入比较群体基因组学中
Scott V Edwards,V V Robin,Nuno Ferrand et al.
Scott V Edwards et al.
Comparative population genomics is an ascendant field using genomic comparisons between species to draw inferences about forces regulating genetic variation. Comparative phylogeography, by contrast, focuses on the shared lineage histories o...
Cédric Finet,Victoria A Kassner,Antonio B Carvalho et al.
Cédric Finet et al.
The vinegar fly Drosophila melanogaster is a pivotal model for invertebrate development, genetics, physiology, neuroscience, and disease. The whole family Drosophilidae, which contains over 4,400 species, offers a plethora of cases for comp...
Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution [0.03%]
祖先的物理压力和后来的免疫基因家族扩张塑造了双壳软体动物的进化
Tim Regan,Lewis Stevens,Carolina Peñaloza et al.
Tim Regan et al.
Bivalve molluscs comprise 20,000 species occupying a wide diversity of marine habitats. As filter feeders and detritivores they act as ecosystem engineers clarifying water, creating reefs, and protecting coastlines. The global decline of na...
The Genome of the Haptophyte Diacronema lutheri (Pavlova lutheri, Pavlovales): A Model for Lipid Biosynthesis in Eukaryotic Algae [0.03%]
金藻目顶管藻(Diacronema lutheri)基因组：金藻门欧氏藻纲脂质生物合成模型
Chris J Hulatt,René H Wijffels,Matthew C Posewitz
Chris J Hulatt
Haptophytes are biogeochemically and industrially important protists with underexplored genomic diversity. We present a nuclear genome assembly for the class Pavlovales, which was assembled with PacBio long-read data into highly contiguous ...
Erratum to: Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation [0.03%]
Correction to: 斑银鱼基因组染色体水平组装揭示了序列多样性和结构变异的极端水平
Anna Tigano,Arne Jacobs,Aryn P Wilder et al.
Anna Tigano et al.
Published Erratum
Genome biology and evolution. 2021 Jul 6;13(7):evab163. DOI:10.1093/gbe/evab163 2021