Transition From Land to Sea: Comparative Genomics Illuminates the Adaptive Evolution of the Intertidal Spider [0.03%]
从陆地到海洋的过渡：比较基因组学揭示了潮间带蜘蛛适应性进化的过程
Fan Li,Yunyun Lv,Chao Bian et al.
Fan Li et al.
Spiders are renowned for their ecological versatility and silk-based innovations in materials science, yet marine environments remain virtually uncolonized by this predominantly terrestrial lineage. A striking exception is the obligate inte...
Champuru 2: Improved Scoring of Alignments and a User-Friendly Graphical Interface [0.03%]
champuru 2：优化比对计分和用户图形界面
Yann Spöri,Jean-François Flot
Yann Spöri
Champuru is a web-based software tool that helps determine the two sequences present in mixed Sanger chromatograms obtained by simultaneously sequencing two DNA templates of unequal lengths. A previous version (Champuru 1.0) was published a...
SPrUCE: Utilizing Ultraconserved Elements of DNA for Population-Level Genetic Diversity Estimation [0.03%]
基于DNA超保守元件的群体遗传多样性估计工具SPrUCE
Daira Melendez,Ali Osman Berk Şapcı,Vineet Bafna et al.
Daira Melendez et al.
Ultraconserved elements (UCEs) provide ideal candidates for targeted sequencing and cost-effective acquisition of genome-wide data. While UCEs have been widely used in phylogenetic studies to reconstruct evolutionary relationships, their us...
Harnessing Deep Learning in Searching Wild Relatives of Domestic Animals [0.03%]
深度学习在寻找家养动物野生亲缘种中的应用
Zheng-Fei Cai,Bei Liu,Ting-Ting Yin et al.
Zheng-Fei Cai et al.
Wild relatives of domestic animals are crucial reservoirs of genetic diversity, yet pervasive hybridization with domestic animals poses significant conservation challenges. Here, we developed a deep learning-based pipeline, consisting of a ...
DNA Barcode Reference Library for European Ants: A Roadmap for Phylogeography and Species Discovery [0.03%]
欧洲蚂蚁的DNA条形码参考文库： phylogeography和物种发现的路线图
Mattia Menchetti,Enrico Schifani,Fede García et al.
Mattia Menchetti et al.
DNA barcode reference libraries provide useful tools for specimen identification, highlighting potential new species and detecting introduced ones. Here, we present a comprehensive DNA barcode library for European ants and, in order to tack...
ChloroScan: Recovering Plastid Genome Bins From Metagenomic Data [0.03%]
基于元基因组数据恢复叶绿体基因组Bin的ChloroScan工具
Yuhao Tong,Vanessa Rossetto Marcelino,Robert Turnbull et al.
Yuhao Tong et al.
Genome-resolved metagenomics has contributed greatly to discovering prokaryotic genomes. When applied to microscopic eukaryotes (protists), challenges such as the high number of introns and repeat regions found in nuclear genomes have hampe...
Navigating Cetacean Mitochondrial Genome Data: Identifying Coverage and Deficiencies in Public Repositories [0.03%]
鲸鱼线粒体基因组数据的识别与鉴定公共仓储中的覆盖率和缺陷comings
Luís Afonso,Alessandro Lagrotteria,Ana Sofia Lavrador et al.
Luís Afonso et al.
Genetic reference databases underpin a wide range of molecular approaches used to study cetacean biodiversity, including environmental DNA (eDNA), yet their reliability depends critically on data completeness, taxonomic accuracy, and metada...
OligoN-Design: A Simple and Versatile Tool to Design Specific Probes and Primers From Large Heterogeneous Datasets [0.03%]
oligoN-设计：一种用于从大型异构数据集中设计特定探针和引物的简便而通用的工具
Miguel M Sandin,Marie Walde,Nicolas Henry et al.
Miguel M Sandin et al.
High-throughput environmental DNA sequencing has ushered ecological and evolutionary studies into the big data era. With thousands to millions of DNA sequences, designing taxon-specific oligonucleotides is a current bottleneck of molecular ...
Genome-Wide Characterization of Sex-Linked Regions in the Sangzhi Horned Toad (Boulenophrys sangzhiensis) Reveals Complex Sex Determination Mechanisms [0.03%]
桑植角蟾性连锁区的基因组范围特征揭示了复杂的性别决定机制
Chun H Huang,Si Y Xie,Jun Li et al.
Chun H Huang et al.
Sex chromosomes in amphibians exhibit substantial variability and often remain largely homomorphic, providing a powerful system for studying sex determination. The Sangzhi horned toad (Boulenophrys sangzhiensis) is an ideal model, but limit...
A Field-Deployable eDNA Metabarcoding Workflow Including De Novo Reference Assembly for Characterising Understudied Biodiversity Hotspots [0.03%]
一种现场部署的环境DNA宏条形码工作流，包括从头组装参考基因组以表征研究不足的生物多样性热点地区
Jesse Erens,Christopher Heine,Stefan Lötters et al.
Jesse Erens et al.
Field-deployable DNA metabarcoding offers a transformative approach to biodiversity research and monitoring, yet its application remains limited due to technical constraints and a lack of reference data in poorly studied ecosystems. Combini...