TrigNER: automatically optimized biomedical event trigger recognition on scientific documents [0.03%]
基于科学文献的生物医学事件触发词自动优化识别方法
David Campos,Quoc-Chinh Bui,Sérgio Matos et al.
David Campos et al.
Background: Cellular events play a central role in the understanding of biological processes and functions, providing insight on both physiological and pathogenesis mechanisms. Automatic extraction of mentions of such eve...
Combining de novo and reference-guided assembly with scaffold_builder [0.03%]
基于从头组装和参考基因组引导的混合策略拼接软件Scaffold_builder开发及应用
Genivaldo Gz Silva,Bas E Dutilh,T David Matthews et al.
Genivaldo Gz Silva et al.
Genome sequencing has become routine, however genome assembly still remains a challenge despite the computational advances in the last decade. In particular, the abundance of repeat elements in genomes makes it difficult to assemble them in...
[COMMODE] a large-scale database of molecular descriptors using compounds from PubChem [0.03%]
[便捷]一个大型的分子描述符数据库，使用来自PubChem的化合物
Andreas Dander,Laurin Aj Mueller,Ralf Gallasch et al.
Andreas Dander et al.
Background: Molecular descriptors have been extensively used in the field of structure-oriented drug design and structural chemistry. They have been applied in QSPR and QSAR models to predict ADME-Tox properties, which sp...
Matthew Bellgard,Christophe Beroud,Kay Parkinson et al.
Matthew Bellgard et al.
Rare disease registries (RDRs) are an essential tool to improve knowledge and monitor interventions for rare diseases. If designed appropriately, patient and disease related information captured within them can become the cornerstone for ef...
MIA - A free and open source software for gray scale medical image analysis [0.03%]
MIA-一款用于医学图像分析的开源免费软件
Gert Wollny,Peter Kellman,María-Jesus Ledesma-Carbayo et al.
Gert Wollny et al.
Background: Gray scale images make the bulk of data in bio-medical image analysis, and hence, the main focus of many image processing tasks lies in the processing of these monochrome images. With ever improving acquisitio...
Superplot3d: an open source GUI tool for 3d trajectory visualisation and elementary processing [0.03%]
Superplot3d：一个用于三维轨迹可视化和基本处理的开源GUI工具
Luke J Whitehorn,Frances M Hawkes,Ian An Dublon
Luke J Whitehorn
When acquiring simple three-dimensional (3d) trajectory data it is common to accumulate large coordinate data sets. In order to examine integrity and consistency of object tracking, it is often necessary to rapidly visualise these data. Ord...
MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments [0.03%]
MEGADOCK 3.0：一种使用混合并行计算的蛋白质-蛋白质相互作用预测软件，用于拍规模超级计算机环境
Yuri Matsuzaki,Nobuyuki Uchikoga,Masahito Ohue et al.
Yuri Matsuzaki et al.
Background: Protein-protein interaction (PPI) plays a core role in cellular functions. Massively parallel supercomputing systems have been actively developed over the past few years, which enable large-scale biological pr...
GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses [0.03%]
GEMBASSY：一个全面的基因组分析EMBOSS相关软件包
Hidetoshi Itaya,Kazuki Oshita,Kazuharu Arakawa et al.
Hidetoshi Itaya et al.
The popular European Molecular Biology Open Software Suite (EMBOSS) currently contains over 400 tools used in various bioinformatics researches, equipped with sophisticated development frameworks for interoperability and tool discoverabilit...
CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation [0.03%]
CellSegm -一个用于高通量三维细胞分割的MATLAB工具箱
Erlend Hodneland,Tanja Kögel,Dominik Michael Frei et al.
Erlend Hodneland et al.
: The application of fluorescence microscopy in cell biology often generates a huge amount of imaging data. Automated whole cell segmentation of such data enables the detection and analysis of individual cells, where a manual delineation is...
Implementing a new EPR lineshape parameter for organic radicals in carbonaceous matter [0.03%]
在碳质物质中实现有机自由基的新EPR线形参数
Mathilde Bourbin,Yann Le Du,Laurent Binet et al.
Mathilde Bourbin et al.
Background: Electron Paramagnetic Resonance (EPR) is a non-destructive, non-invasive technique useful for the characterization of organic moieties in primitive carbonaceous matter related to the origin of life. The classi...