A Bayesian Network-Based Approach to Selection of Intervention Points in the Mitogen-Activated Protein Kinase Plant Defense Response Pathway [0.03%]
基于贝叶斯网络的选择干预点的方法在 mitogen 激活的植物防御反应信号通路中的应用
Priya S Venkat,Krishna R Narayanan,Aniruddha Datta
Priya S Venkat
An important problem in computational biology is the identification of potential points of intervention that can lead to modified network behavior in a genetic regulatory network. We consider the problem of deducing the effect of individual...
MuffinInfo: HTML5-Based Statistics Extractor from Next-Generation Sequencing Data [0.03%]
MuffinInfo：下一代测序数据的基于HTML5的统计信息提取工具
Andy S Alic,Ignacio Blanquer
Andy S Alic
Usually, the information known a priori about a newly sequenced organism is limited. Even resequencing the same organism can generate unpredictable output. We introduce MuffinInfo, a FastQ/Fasta/SAM information extractor implemented in HTML...
Cloud-based MOTIFSIM: Detecting Similarity in Large DNA Motif Data Sets [0.03%]
基于云的MOTIFSIM：在大规模DNA基序数据集中检测相似性
Ngoc Tam L Tran,Chun-Hsi Huang
Ngoc Tam L Tran
We developed the cloud-based MOTIFSIM on Amazon Web Services (AWS) cloud. The tool is an extended version from our web-based tool version 2.0, which was developed based on a novel algorithm for detecting similarity in multiple DNA motif dat...
Effect of Protein Repetitiveness on Protein-Protein Interaction Prediction Results Using Support Vector Machines [0.03%]
蛋白质重复性对支持向量机预测蛋白质相互作用的影响
Jie Zhou
Jie Zhou
Background: There are many computational approaches to predict the protein-protein interactions using support vector machines (SVMs) with high performance. In fact, performance of currently reported methods are significan...
OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method [0.03%]
OMPcontact：一种外膜蛋白桶壁间残基相互作用预测方法
Li Zhang,Han Wang,Lun Yan et al.
Li Zhang et al.
In the two transmembrane protein types, outer membrane proteins (OMPs) perform diverse important biochemical functions, including substrate transport and passive nutrient uptake and intake. Hence their 3D structures are expected to reveal t...
Identification of Genes Involved in Breast Cancer Metastasis by Integrating Protein-Protein Interaction Information with Expression Data [0.03%]
整合蛋白质-蛋白质相互作用信息与表达数据识别乳腺癌转移相关基因
Xin Tian,Mingyuan Xin,Jian Luo et al.
Xin Tian et al.
The selection of relevant genes for breast cancer metastasis is critical for the treatment and prognosis of cancer patients. Although much effort has been devoted to the gene selection procedures by use of different statistical analysis met...
NIAS-Server: Neighbors Influence of Amino acids and Secondary Structures in Proteins [0.03%]
NIAS-服务器：蛋白质中氨基酸及二级结构的相互影响
Bruno Borguesan,Mario Inostroza-Ponta,Márcio Dorn
Bruno Borguesan
The exponential growth in the number of experimentally determined three-dimensional protein structures provide a new and relevant knowledge about the conformation of amino acids in proteins. Only a few of probability densities of amino acid...
Impact of Microarray Preprocessing Techniques in Unraveling Biological Pathways [0.03%]
微阵列预处理技术在解析生物通路中的影响分析
Enrique J Deandrés-Galiana,Juan Luis Fernández-Martínez,Leorey N Saligan et al.
Enrique J Deandrés-Galiana et al.
To better understand the impact of microarray preprocessing normalization techniques on the analysis of biological pathways in the prediction of chronic fatigue (CF) following radiation therapy, this study has compared the list of predictiv...
Nonparametric Model of Smooth Muscle Force Production During Electrical Stimulation [0.03%]
电刺激时非线性平滑肌力产生的模型研究
Marc Cole,Steffen Eikenberry,Takahide Kato et al.
Marc Cole et al.
A nonparametric model of smooth muscle tension response to electrical stimulation was estimated using the Laguerre expansion technique of nonlinear system kernel estimation. The experimental data consisted of force responses of smooth muscl...
Comparing Unlabeled Pedigree Graphs via Covering with Bipartite and Path [0.03%]
基于二分图和路径的谱系图覆盖及对比方法研究
Lamiaa A Amar,Nahla A Belal,Shaheera Rashwan
Lamiaa A Amar
Family trees, also called pedigrees, have important information about an individual's past and future life. It can be used as a diagnostic tool and help guide decisions about genetic testing for the patient and at-risk family members. There...