Population data mobility retrieval at territory of Czechia in pandemic COVID-19 period [0.03%]
新冠肺炎疫情期间的捷克人口数据流动性检索分析
Jan Platos,Pavel Kromer,Miroslav Voznak et al.
Jan Platos et al.
This article describes the methodology and the possibilities of collecting operation data in a mobile network provider. First, the architecture and the principles used in the system are described. The precision analysis of the population co...
Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse [0.03%]
利用多级计算重用优化大规模显微图像分析工作流的参数敏感性分析
Willian Barreiros Jr,Jeremias Moreira,Tahsin Kurc et al.
Willian Barreiros Jr et al.
Parameter sensitivity analysis (SA) is an effective tool to gain knowledge about complex analysis applications and assess the variability in their analysis results. However, it is an expensive process as it requires the execution of the tar...
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with IntelⓇ Xeon Phi™ [0.03%]
基于Intel至强融和Phi的不规则波前传播模式的协同和非核心执行
Jeremias Gomes,Alba C M A de Melo,Jun Kong et al.
Jeremias Gomes et al.
The Irregular Wavefront Propagation Pattern (IWPP) is a core computing structure in several image analysis operations. Efficient implementation of IWPP on the Intel Xeon Phi is difficult because of the irregular data access and computation ...
Early experiences in developing and managing the neuroscience gateway [0.03%]
神经科学_gateways_的开发和管理的早期经验
Subhashini Sivagnanam,Amit Majumdar,Kenneth Yoshimoto et al.
Subhashini Sivagnanam et al.
The last few decades have seen the emergence of computational neuroscience as a mature field where researchers are interested in modeling complex and large neuronal systems and require access to high performance computing machines and assoc...
Rachana Ananthakrishnan,Kyle Chard,Ian Foster et al.
Rachana Ananthakrishnan et al.
Globus, developed as Software-as-a-Service (SaaS) for research data management, also provides APIs that constitute a flexible and powerful Platform-as-a-Service (PaaS) to which developers can outsource data management activities such as tra...
Massively Multithreaded Maxflow for Image Segmentation on the Cray XMT-2 [0.03%]
用于Cray XMT-2图像分割的大量线程最大流算法
Shahid H Bokhari,Ümit V Çatalyürek,Metin N Gurcan
Shahid H Bokhari
Image segmentation is a very important step in the computerized analysis of digital images. The maxflow mincut approach has been successfully used to obtain minimum energy segmentations of images in many fields. Classical algorithms for max...
Experiences Building Globus Genomics: A Next-Generation Sequencing Analysis Service using Galaxy, Globus, and Amazon Web Services [0.03%]
建立Globus Genomics的经验：使用Galaxy，Globus和Amazon网络服务的下一代测序分析服务
Ravi K Madduri,Dinanath Sulakhe,Lukasz Lacinski et al.
Ravi K Madduri et al.
We describe Globus Genomics, a system that we have developed for rapid analysis of large quantities of next-generation sequencing (NGS) genomic data. This system achieves a high degree of end-to-end automation that encompasses every stage o...
Optimizing high performance computing workflow for protein functional annotation [0.03%]
用于蛋白质功能注释的高性能计算工作流优化
Larissa Stanberry,Bhanu Rekepalli,Yuan Liu et al.
Larissa Stanberry et al.
Functional annotation of newly sequenced genomes is one of the major challenges in modern biology. With modern sequencing technologies, the protein sequence universe is rapidly expanding. Newly sequenced bacterial genomes alone contain over...
Enabling large-scale next-generation sequence assembly with Blacklight [0.03%]
利用Blacklight实现下一代序列的大规模组合组装能力
M Brian Couger,Lenore Pipes,Fabio Squina et al.
M Brian Couger et al.
A variety of extremely challenging biological sequence analyses were conducted on the XSEDE large shared memory resource Blacklight, using current bioinformatics tools and encompassing a wide range of scientific applications. These include ...
Parallel classification and feature selection in microarray data using SPRINT [0.03%]
基于SPRINT的微阵列数据分析及特征选择方法研究
Lawrence Mitchell,Terence M Sloan,Muriel Mewissen et al.
Lawrence Mitchell et al.
The statistical language R is favoured by many biostatisticians for processing microarray data. In recent times, the quantity of data that can be obtained in experiments has risen significantly, making previously fast analyses time consumin...