Application Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs: A Case Study with Microscopy Image Analysis [0.03%]
基于多核CPU、GPU和MIC的系统上的应用程序性能分析及高效运行：以显微图像处理为例研究
George Teodoro,Tahsin Kurc,Guilherme Andrade et al.
George Teodoro et al.
We carry out a comparative performance study of multi-core CPUs, GPUs and Intel Xeon Phi (Many Integrated Core-MIC) with a microscopy image analysis application. We experimentally evaluate the performance of computing devices on core operat...
High performance in silico virtual drug screening on many-core processors [0.03%]
高性能基于多核处理器的计算机虚拟药物筛选技术
Simon McIntosh-Smith,James Price,Richard B Sessions et al.
Simon McIntosh-Smith et al.
Drug screening is an important part of the drug development pipeline for the pharmaceutical industry. Traditional, lab-based methods are increasingly being augmented with computational methods, ranging from simple molecular similarity searc...
Henri Casanova,Francine Berman,Thomas Bartol et al.
Henri Casanova et al.
Ensembles of widely distributed, heterogeneous resources, or Grids, have emerged as popular platforms for large-scale scientific applications. In this paper we present the Virtual Instrument project, which provides an integrated application...
Tahsin Kurc,Shannon Hastings,Vijay Kumar et al.
Tahsin Kurc et al.
Integrative biomedical research projects query, analyze, and integrate many different data types and make use of datasets obtained from measurements or simulations of structure and function at multiple biological scales. With the increasing...
AUTOMATIC GENERATION OF FFT FOR TRANSLATIONS OF MULTIPOLE EXPANSIONS IN SPHERICAL HARMONICS [0.03%]
多极展开在球谐函数中的FFT的自动生成及翻译
Jakub Kurzak,Dragan Mirkovic,B Montgomery Pettitt et al.
Jakub Kurzak et al.
The fast multipole method (FMM) is an efficient algorithm for calculating electrostatic interactions in molecular simulations and a promising alternative to Ewald summation methods. Translation of multipole expansion in spherical harmonics ...