Testing Classical Species Properties with Contemporary Data: How "Bad Species" in the Brassy Ringlets (Erebia tyndarus complex, Lepidoptera) Turned Good [0.03%]
用现代数据检验经典的类群属性——“差物种”在金环 Erebia tyndarus 类群中如何变好（Lepidoptera）
Paolo Gratton,Emiliano Trucchi,Alessandra Trasatti et al.
Paolo Gratton et al.
All species concepts are rooted in reproductive, and ultimately genealogical, relations. Genetic data are thus the most important source of information for species delimitation. Current ease of access to genomic data and recent computationa...
The Phylogeny of Rickettsia Using Different Evolutionary Signatures: How Tree-Like is Bacterial Evolution? [0.03%]
基于不同的进化特征的立克次氏体的系统发育研究：细菌进化的树状性如何？
Gemma G R Murray,Lucy A Weinert,Emma L Rhule et al.
Gemma G R Murray et al.
Rickettsia is a genus of intracellular bacteria whose hosts and transmission strategies are both impressively diverse, and this is reflected in a highly dynamic genome. Some previous studies have described the evolutionary history of Ricket...
Invariant Versus Classical Quartet Inference When Evolution is Heterogeneous Across Sites and Lineages [0.03%]
当各位点和谱系的进化是异质的时候，不变性的推理相对于经典四联法的推理
Jesús Fernández-Sánchez,Marta Casanellas
Jesús Fernández-Sánchez
One reason why classical phylogenetic reconstruction methods fail to correctly infer the underlying topology is because they assume oversimplified models. In this article, we propose a quartet reconstruction method consistent with the most ...
Published Erratum
Systematic biology. 2016 Jan;65(1):180. DOI:10.1093/sysbio/syv074 2016
Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty [0.03%]
考虑系统发育不确定性的贝叶斯模型检验的谱系工作分布
Guy Baele,Philippe Lemey,Marc A Suchard
Guy Baele
Marginal likelihood estimates to compare models using Bayes factors frequently accompany Bayesian phylogenetic inference. Approaches to estimate marginal likelihoods have garnered increased attention over the past decade. In particular, the...
Diego Mallo,Leonardo De Oliveira Martins,David Posada
Diego Mallo
We present a fast and flexible software package--SimPhy--for the simulation of multiple gene families evolving under incomplete lineage sorting, gene duplication and loss, horizontal gene transfer--all three potentially leading to species t...
Testing for Depéret's Rule (Body Size Increase) in Mammals using Combined Extinct and Extant Data [0.03%]
结合灭绝和现存数据检验哺乳动物的Déperet规则(体型增大)
Folmer Bokma,Marc Godinot,Olivier Maridet et al.
Folmer Bokma et al.
Whether or not evolutionary lineages in general show a tendency to increase in body size has often been discussed. This tendency has been dubbed "Cope's rule" but because Cope never hypothesized it, we suggest renaming it after Depéret, wh...
Inflation of Molecular Clock Rates and Dates: Molecular Phylogenetics, Biogeography, and Diversification of a Global Cicada Radiation from Australasia (Hemiptera: Cicadidae: Cicadettini) [0.03%]
分子钟速率和时间的膨胀：来自澳洲的全球蝉辐射（半翅目：蝉科：Cicadettini）的分子谱系发生、生物地理学和多样化研究
David C Marshall,Kathy B R Hill,Max Moulds et al.
David C Marshall et al.
Dated phylogenetic trees are important for studying mechanisms of diversification, and molecular clocks are important tools for studies of organisms lacking good fossil records. However, studies have begun to identify problems in molecular ...
Chi Zhang,Tanja Stadler,Seraina Klopfstein et al.
Chi Zhang et al.
Bayesian total-evidence dating involves the simultaneous analysis of morphological data from the fossil record and morphological and sequence data from recent organisms, and it accommodates the uncertainty in the placement of fossils while ...
Phylogenies, the Comparative Method, and the Conflation of Tempo and Mode [0.03%]
系统发育、比较方法以及时间和方式的混淆
Antigoni Kaliontzopoulou,Dean C Adams
Antigoni Kaliontzopoulou
The comparison of mathematical models that represent alternative hypotheses about the tempo and mode of evolutionary change is a common approach for assessing the evolutionary processes underlying phenotypic diversification. However, becaus...