On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods [0.03%]
基于基因树的物种树方法（或缺乏）对基因树估算误差的稳健性分析
Sebastien Roch,Tandy Warnow
Sebastien Roch
The estimation of species trees using multiple loci has become increasingly common. Because different loci can have different phylogenetic histories (reflected in different gene tree topologies) for multiple biological causes, new approache...
Taxonomy and Phylogeny Can Yield Comparable Results in Comparative Paleontological Analyses [0.03%]
分类学和系统发育能够产生可比的结果以进行比较古生物学分析
Laura C Soul,Matt Friedman
Laura C Soul
Many extinct taxa with extensive fossil records and mature taxonomic classifications have not yet been the subject of formal phylogenetic analysis. Here, we test whether the taxonomies available for such groups represent useful (i.e., non-m...
Fanny Gascuel,Régis Ferrière,Robin Aguilée et al.
Fanny Gascuel et al.
Whether biotic or abiotic factors are the dominant drivers of clade diversification is a long-standing question in evolutionary biology. The ubiquitous patterns of phylogenetic imbalance and branching slowdown have been taken as supporting ...
Approximate Bayesian Computation Reveals the Crucial Role of Oceanic Islands for the Assembly of Continental Biodiversity [0.03%]
近似贝叶斯计算揭示了海洋岛屿在大陆生物多样性形成中的关键作用
Jairo Patiño,Mark Carine,Patrick Mardulyn et al.
Jairo Patiño et al.
The perceived low levels of genetic diversity, poor interspecific competitive and defensive ability, and loss of dispersal capacities of insular lineages have driven the view that oceanic islands are evolutionary dead ends. Focusing on the ...
Phylogenetic Comparative Methods for Evaluating the Evolutionary History of Function-Valued Traits [0.03%]
功能值性状进化史的谱系比较方法评估
Eric W Goolsby
Eric W Goolsby
Phylogenetic comparative methods offer a suite of tools for studying trait evolution. However, most models inherently assume fixed trait values within species. Although some methods can incorporate error around species means, few are capabl...
Multilocus Phylogeny of the Afrotropical Freshwater Crab Fauna Reveals Historical Drainage Connectivity and Transoceanic Dispersal Since the Eocene [0.03%]
基于非洲淡水蟹类的多基因组系统发育探讨历史水系连通性和始新世以来的跨大洋扩散事件
Savel R Daniels,Ethel E Phiri,Sebastian Klaus et al.
Savel R Daniels et al.
Phylogenetic reconstruction, divergence time estimations and ancestral range estimation were undertaken for 66% of the Afrotropical freshwater crab fauna (Potamonautidae) based on four partial DNA loci (12S rRNA, 16S rRNA, cytochrome oxidas...
Multilocus species trees show the recent adaptive radiation of the mimetic heliconius butterflies [0.03%]
多基因座位物种树显示了模拟箭毒蛙近期适应性辐射的 heelconius 蝴蝶分类群
Krzysztof M Kozak,Niklas Wahlberg,Andrew F E Neild et al.
Krzysztof M Kozak et al.
Müllerian mimicry among Neotropical Heliconiini butterflies is an excellent example of natural selection, associated with the diversification of a large continental-scale radiation. Some of the processes driving the evolution of mimicry ri...
Circumstances in which parsimony but not compatibility will be provably misleading [0.03%]
当简约法但不是相容性法会误导人的状况下的证明性理论研究
Robert W Scotland,Mike Steel
Robert W Scotland
Phylogenetic methods typically rely on an appropriate model of how data evolved in order to infer an accurate phylogenetic tree. For molecular data, standard statistical methods have provided an effective strategy for extracting phylogeneti...
Chris Whidden,Frederick A Matsen th
Chris Whidden
In order to gain an understanding of the effectiveness of phylogenetic Markov chain Monte Carlo (MCMC), it is important to understand how quickly the empirical distribution of the MCMC converges to the posterior distribution. In this articl...
Ancestral state reconstruction, rate heterogeneity, and the evolution of reptile viviparity [0.03%]
重建始态、变化率异速与爬行类动物胎生的进化
Benedict King,Michael S Y Lee
Benedict King
Virtually all models for reconstructing ancestral states for discrete characters make the crucial assumption that the trait of interest evolves at a uniform rate across the entire tree. However, this assumption is unlikely to hold in many s...