Assessing the Adequacy of Morphological Models using Posterior Predictive Simulations [0.03%]
用事后预测模拟评估形态模型的有效性
Laura P A Mulvey,Michael R May,Jeremy M Brown et al.
Laura P A Mulvey et al.
Reconstructing the evolutionary history of different groups of organisms provides insight into how life originated and diversified on Earth. Phylogenetic trees are commonly used to estimate this evolutionary history. Within Bayesian phyloge...
Phylogenomics of Bivalvia Using Ultraconserved Elements (UCEs) Reveal New Topologies for Pteriomorphia and Imparidentia [0.03%]
基于超保守元件的软件动物瓣鳃纲系统发生基因组学研究重建珍珠贝纲和蚌纲的新系统树
Yi-Xuan Li,Jack Chi-Ho Ip,Chong Chen et al.
Yi-Xuan Li et al.
Despite significant advances in phylogenetics over the past decades, the deep relationships within Bivalvia (phylum Mollusca) remain inconclusive. Previous efforts based on morphology or several genes have failed to resolve many key nodes i...
The limits of the metapopulation: Lineage fragmentation in a widespread terrestrial salamander (Plethodon cinereus) [0.03%]
广泛分布的陆生红腹臭蛙（Plethodon cinereus）中的谱系片段化：元种群的局限性
Brian P Waldron,Emily F Watts,Donald J Morgan et al.
Brian P Waldron et al.
In vicariant species formation, divergence results primarily from periods of allopatry and restricted gene flow. Widespread species harboring differentiated, geographically distinct sublineages offer a window into what may be a common mode ...
Hierarchical Heuristic Species Delimitation Under the Multispecies Coalescent Model with Migration [0.03%]
含迁移的多层次启发式多物种谱系共祖模型下的物种界定问题研究
Daniel Kornai,Xiyun Jiao,Jiayi Ji et al.
Daniel Kornai et al.
The multispecies coalescent (MSC) model accommodates genealogical fluctuations across the genome and provides a natural framework for comparative analysis of genomic sequence data from closely related species to infer the history of species...
Phylogenetic Biogeography Inference Using Dynamic Paleogeography Models and Explicit Geographic Ranges [0.03%]
基于动态古地理模型和具体地理位置的进化生物地理推断
J Salvador Arias
J Salvador Arias
To model distribution ranges, the most popular methods of phylogenetic biogeography divide Earth into a handful of predefined areas. Other methods use explicit geographic ranges, but unfortunately, these methods assume a static Earth, ignor...
Phylogenomics and Pervasive Genome-Wide Phylogenetic Discordance Among Fin Whales (Balaenoptera physalus) [0.03%]
鳁鲸的系统基因组学及其全基因组范围的系统发育分歧性研究
Fabricio Furni,Eduardo R Secchi,Camilla Speller et al.
Fabricio Furni et al.
Phylogenomics has the power to uncover complex phylogenetic scenarios across the genome. In most cases, no single topology is reflected across the entire genome as the phylogenetic signal differs among genomic regions due to processes, such...
Persistent Gene Flow Suggests an Absence of Reproductive Isolation in an African Antelope Speciation Model [0.03%]
基因流动持续存在暗示非洲长颈鹿进化模型中不存在生殖隔离现象
Xi Wang,Casper-Emil Tingskov Pedersen,Georgios Athanasiadis et al.
Xi Wang et al.
African antelope diversity is a globally unique vestige of a much richer world-wide Pleistocene megafauna. Despite this, the evolutionary processes leading to the prolific radiation of African antelopes are not well understood. Here, we seq...
PhyloJunction: A Computational Framework for Simulating, Developing, and Teaching Evolutionary Models [0.03%]
PhyloJunction：一个用于模拟、开发和教学进化模型的计算框架
Fábio K Mendes,Michael J Landis
Fábio K Mendes
We introduce PhyloJunction, a computational framework designed to facilitate the prototyping, testing, and characterization of evolutionary models. PhyloJunction is distributed as an open-source Python library that can be used to implement ...
Adaptive Radiation Without Independent Stages of Trait Evolution in a Group of Caribbean Anoles [0.03%]
加勒比壁虎适应辐射过程中性状演变没有独立阶段
Brooke Bodensteiner,Edward D Burress,Martha M Muñoz
Brooke Bodensteiner
Adaptive radiation involves diversification along multiple trait axes, producing phenotypically diverse, species-rich lineages. Theory generally predicts that multi-trait evolution occurs via a "stages" model, with some traits saturating ea...
Bayesian Inference Under the Multispecies Coalescent with Ancient DNA Sequences [0.03%]
基于古DNA序列的多重共祖模型中的贝叶斯推断
Anna A Nagel,Tomáš Flouri,Ziheng Yang et al.
Anna A Nagel et al.
Ancient DNA (aDNA) is increasingly being used to investigate questions such as the phylogenetic relationships and divergence times of extant and extinct species. If aDNA samples are sufficiently old, expected branch lengths (in units of nuc...