Infomap Bioregions: Interactive Mapping of Biogeographical Regions from Species Distributions [0.03%]
基于物种分布的生物地理区域的互动制图：Infomap Bioregions插件
Daniel Edler,Thaís Guedes,Alexander Zizka et al.
Daniel Edler et al.
Biogeographical regions (bioregions) reveal how different sets of species are spatially grouped and therefore are important units for conservation, historical biogeography, ecology, and evolution. Several methods have been developed to iden...
Phylogenomics of Lophotrochozoa with Consideration of Systematic Error [0.03%]
系统误差下的Lophotrochozoa的系谱组学研究
Kevin M Kocot,Torsten H Struck,Julia Merkel et al.
Kevin M Kocot et al.
Phylogenomic studies have improved understanding of deep metazoan phylogeny and show promise for resolving incongruences among analyses based on limited numbers of loci. One region of the animal tree that has been especially difficult to re...
Evaluating the Impact of Genomic Data and Priors on Bayesian Estimates of the Angiosperm Evolutionary Timescale [0.03%]
基因组数据和先验对被子植物进化时间标尺的贝叶斯估算的影响评估
Charles S P Foster,Hervê Sauquet,Marlien van der Merwe et al.
Charles S P Foster et al.
The evolutionary timescale of angiosperms has long been a key question in biology. Molecular estimates of this timescale have shown considerable variation, being influenced by differences in taxon sampling, gene sampling, fossil calibration...
Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms [0.03%]
祖先基因流动和并行细胞器基因组捕获导致了一类被子植物中极端的系统基因组分歧现象
Ryan A Folk,Jennifer R Mandel,John V Freudenstein
Ryan A Folk
While hybridization has recently received a resurgence of attention from systematists and evolutionary biologists, there remains a dearth of case studies on ancient, diversified hybrid lineages-clades of organisms that originated through re...
Who Let the CAT Out of the Bag? Accurately Dealing with Substitutional Heterogeneity in Phylogenomic Analyses [0.03%]
谁让猫跑了？论系统基因组分析中处理替代异质性的准确性问题
Nathan V Whelan,Kenneth M Halanych
Nathan V Whelan
As phylogenetic datasets have increased in size, site-heterogeneous substitution models such as CAT-F81 and CAT-GTR have been advocated in favor of other models because they purportedly suppress long-branch attraction (LBA). These models ar...
Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and Benchmarking [0.03%]
基于 Align 或不基于 Align 的系统发育树估计：新距离方法及基准测试
Marcin Bogusz,Simon Whelan
Marcin Bogusz
Phylogenetic tree inference is a critical component of many systematic and evolutionary studies. The majority of these studies are based on the two-step process of multiple sequence alignment followed by tree inference, despite persistent e...
Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa [0.03%]
迈向自动更新平台以估计物种形成和迁移率、年龄及分类单元关系的速度
Alexandre Antonelli,Hannes Hettling,Fabien L Condamine et al.
Alexandre Antonelli et al.
Rapidly growing biological data-including molecular sequences and fossils-hold an unprecedented potential to reveal how evolutionary processes generate and maintain biodiversity. However, researchers often have to develop their own idiosync...
Species Distributions, Quantum Theory, and the Enhancement of Biodiversity Measures [0.03%]
物种分布、量子理论与生物多样性测量的提升
Raimundo Real,A Márcia Barbosa,Joseph W Bull
Raimundo Real
Species distributions are typically represented by records of their observed occurrence at a given spatial and temporal scale. Such records are inevitably incomplete and contingent on the spatial-temporal circumstances under which the obser...
Barrier Displacement on a Neutral Landscape: Toward a Theory of Continental Biogeography [0.03%]
中性景观上的障碍物位移：迈向大陆生物地理学理论
James S Albert,Donald R Schoolmaster Jr,Victor Tagliacollo et al.
James S Albert et al.
Macroevolutionary theory posits three processes leading to lineage diversification and the formation of regional biotas: dispersal (species geographic range expansion), speciation (species lineage splitting), and extinction (species lineage...
Efficient Detection of Repeating Sites to Accelerate Phylogenetic Likelihood Calculations [0.03%]
高效检测重复位点以加速系统发生似然计算
K Kobert,A Stamatakis,T Flouri
K Kobert
The phylogenetic likelihood function (PLF) is the major computational bottleneck in several applications of evolutionary biology such as phylogenetic inference, species delimitation, model selection, and divergence times estimation. Given t...