Site-specific structure and stability constrained substitution models improve phylogenetic inference [0.03%]
基于结构和稳定性的位点特异性替代模型可改善系统发生推断
Ivan Lorca-Alonso,Otero-de-Navascues Fernando,Miguel Arenas et al.
Ivan Lorca-Alonso et al.
In previous studies, we presented our site-specific Stability Constrained substitution models of Protein Evolution (Stab-CPE) that define fitness as the probability of finding a protein folded in its native state but ignore changes in the n...
PlaceMyFossils: An Integrative Approach to Analyze and Visualize the Phylogenetic Placement of Fossils Using Backbone Trees [0.03%]
基于主干树分析和可视化化石系统发育地位的集成方法：PlaceMyFossils
Santiago A Catalano,Ignacio Escapa,Kelsey D Pugh et al.
Santiago A Catalano et al.
In recent years, there has been a growing interest in using morphology to establish the placement of species on phylogenetic trees derived from molecular data. This is relevant in the case of recently extinct or fossil species, which are us...
Ethan F Gyllenhaal,Serina S Brady,Lucas H DeCicco et al.
Ethan F Gyllenhaal et al.
Secondary contact between previously allopatric lineages offers a test of reproductive isolating mechanisms that may have accrued in isolation. Such instances of contact can produce stable hybrid zones-where reproductive isolation can furth...
Phylogenomics resolve the systematics and biogeography of the ant tribe Myrmicini and tribal relationships within the hyperdiverse ant subfamily Myrmicinae [0.03%]
系统发育基因组学揭示了蚁亚科类群之一的蚂蚁（Myrmicini族）的分类和生物地理学，以及该族在超多样化的蚁亚科（Myrmicinae）中的亲缘关系。
Matthew Prebus,Christian Rabeling
Matthew Prebus
Ants are a globally distributed and highly diverse group of eusocial animals, playing key ecological roles in most of the world's terrestrial ecosystems. Our understanding of the processes involved in the evolution of this diverse family is...
Species Richness and Speciation Rates for all Terrestrial Animals Emerge from a Synthesis of Ecological Theories [0.03%]
所有陆地动物的物种丰富度和物种形成率源于生态理论的融合
Lucas D Fernandes,Rogier E Hintzen,Samuel E D Thompson et al.
Lucas D Fernandes et al.
The total number of species on earth and the rate at which new species are created are fundamental questions for ecology, evolution and conservation. These questions have typically been approached separately, despite their obvious interconn...
Massive inter-species introgression overwhelms phylogenomic relationships among jaguar, lion, and leopard [0.03%]
美洲豹，狮子和豹之间的大量种间渐渗超过系统发育基因组关系
Sarah H D Santos,Henrique V Figueiró,Tomas Flouri et al.
Sarah H D Santos et al.
Phylogenomic analyses of closely related species allow important glimpses into their evolutionary history. Although recent studies have demonstrated that interspecies hybridization has occurred in several groups, incorporating this process ...
Correction to: Phylogenomic Discordance is Driven by Wide-Spread Introgression and Incomplete Lineage Sorting During Rapid Species Diversification Within Rattlesnakes (Viperidae: Crotalus and Sistrurus) [0.03%]
修正：系统发育基因组不一致由响尾蛇（脊蛇科，Crotalus和Sistrurus）快速物种多样化过程中广泛存在的种间渐渗杂交和谱系不完全排序引起
Published Erratum
Systematic biology. 2025 Mar 13:syaf008. DOI:10.1093/sysbio/syaf008 2025
Global Diversity Patterns are Explained by Diversification Rates and Dispersal at Ancient, not Shallow, Timescales [0.03%]
全球多样性图谱由远古而非最近的分化率和迁入解释
Patrick R Stephens,Maxwell J Farrell,T Jonathan Davies et al.
Patrick R Stephens et al.
Explaining global species richness patterns is a major goal of evolution, ecology, and biogeography. These richness patterns are often attributed to spatial variation in diversification rates (speciation minus extinction). Surprisingly, pro...
Erwan Delrieu-Trottin,Selim Ben Chehida,Tedjo Sukmono et al.
Erwan Delrieu-Trottin et al.
Tropical insular systems have long attracted biologists, stimulating some important controversies in ecology and evolution. Eustatic fluctuations during the Pleistocene have been invoked to explain species dispersal and proliferation in the...
Phylogenomics of marine angelfishes: diagnosing sources of systematic discordance for an iconic reef fish family (F: Pomacanthidae) [0.03%]
海洋天使鱼的系统基因组学：识别一个著名珊瑚礁鱼类家庭(F: Pomacanthidae) 系统不一致性的来源
Lauriane M Baraf,Julia Y Hung,Peter F Cowman
Lauriane M Baraf
Genome-scale datasets are resolving challenging nodes across the tree of life. These datasets however, characterized by inherent heterogeneity, often push traditional phylogenetic reconstruction methods to their limits. By integrating multi...