Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data [0.03%]
利用多基因序列数据同时估计网状谱系和基因树
Dingqiao Wen,Luay Nakhleh
Dingqiao Wen
The multispecies network coalescent (MSNC) is a stochastic process that captures how gene trees grow within the branches of a phylogenetic network. Coupling the MSNC with a stochastic mutational process that operates along the branches of t...
Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies [0.03%]
基于化石和系统发育的年龄依赖灭绝的估计证据之间的对比
Oskar Hagen,Tobias Andermann,Tiago B Quental et al.
Oskar Hagen et al.
The estimation of diversification rates is one of the most vividly debated topics in modern systematics, with considerable controversy surrounding the power of phylogenetic and fossil-based approaches in estimating extinction. Van Valen's s...
An Evaluation of Different Partitioning Strategies for Bayesian Estimation of Species Divergence Times [0.03%]
评测贝叶斯分歧时间物种划分策略的不同方法
Konstantinos Angelis,Sandra Álvarez-Carretero,Mario Dos Reis et al.
Konstantinos Angelis et al.
The explosive growth of molecular sequence data has made it possible to estimate species divergence times under relaxed-clock models using genome-scale data sets with many gene loci. In order to improve both model realism and to best extrac...
Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo Clade (Caryophyllales) [0.03%]
用于推断系统发育的大型基因家族的目标富集：Portultego族（虎耳草目）光合作用基因的系谱和分子进化
Abigail J Moore,Jurriaan M De Vos,Lillian P Hancock et al.
Abigail J Moore et al.
Hybrid enrichment is an increasingly popular approach for obtaining hundreds of loci for phylogenetic analysis across many taxa quickly and cheaply. The genes targeted for sequencing are typically single-copy loci, which facilitate a more s...
To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods [0.03%]
包含或不包含：基因过滤对物种树估算方法的影响
Erin K Molloy,Tandy Warnow
Erin K Molloy
With the increasing availability of whole genome data, many species trees are being constructed from hundreds to thousands of loci. Although concatenation analysis using maximum likelihood is a standard approach for estimating species trees...
An Assessment of Phylogenetic Tools for Analyzing the Interplay Between Interspecific Interactions and Phenotypic Evolution [0.03%]
评估分析种间相互作用和表型进化之间相互作用的谱系工具
J P Drury,G F Grether,T Garland Jr et al.
J P Drury et al.
Much ecological and evolutionary theory predicts that interspecific interactions often drive phenotypic diversification and that species phenotypes in turn influence species interactions. Several phylogenetic comparative methods have been d...
Maryam K Garba,Tom M W Nye,Richard J Boys
Maryam K Garba
Most existing measures of distance between phylogenetic trees are based on the geometry or topology of the trees. Instead, we consider distance measures which are based on the underlying probability distributions on genetic sequence data in...
Florian C Boucher,Vincent Démery,Elena Conti et al.
Florian C Boucher et al.
The evolution of quantitative characters over long timescales is often studied using stochastic diffusion models. The current toolbox available to students of macroevolution is however limited to two main models: Brownian motion and the Orn...
Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families [0.03%]
表型和基因型数据的谱系系统发育分析解析有袋目动物科之间的关系
David A Duchêne,Jason G Bragg,Sebastián Duchêne et al.
David A Duchêne et al.
A fundamental challenge in resolving evolutionary relationships across the tree of life is to account for heterogeneity in the evolutionary signal across loci. Studies of marsupial mammals have demonstrated that this heterogeneity can be su...
Resolving Recent Plant Radiations: Power and Robustness of Genotyping-by-Sequencing [0.03%]
利用基因分型测序解决植物的近期分化事件：效能和稳健性分析
Mario Fernández-Mazuecos,Greg Mellers,Beatriz Vigalondo et al.
Mario Fernández-Mazuecos et al.
Disentangling species boundaries and phylogenetic relationships within recent evolutionary radiations is a challenge due to the poor morphological differentiation and low genetic divergence between species, frequently accompanied by phenoty...