A General and Efficient Algorithm for the Likelihood of Diversification and Discrete-Trait Evolutionary Models [0.03%]
一种广泛且高效的算法，用于计算分化和离散性状进化模型的似然值
Stilianos Louca,Matthew W Pennell
Stilianos Louca
As the size of phylogenetic trees and comparative data continue to grow and more complex models are developed to investigate the processes that gave rise to them, macroevolutionary analyses are becoming increasingly limited by computational...
Olivier Gascuel,Mike Steel
Olivier Gascuel
Reconstructing ancestral characters and traits along a phylogenetic tree is central to evolutionary biology. It is the key to understanding morphology changes among species, inferring ancestral biochemical properties of life, or recovering ...
The Invariant Nature of a Morphological Character and Character State: Insights from Gene Regulatory Networks [0.03%]
形态特征及其状态的不变性：来自基因调控网络的启示
Sergei Tarasov
Sergei Tarasov
What constitutes a discrete morphological character versus character state has been long discussed in the systematics literature but the consensus on this issue is still missing. Different methods of classifying organismal features into cha...
An Integrative Approach Using Phylogenomics and High-Resolution X-Ray Computed Tomography for Species Delimitation in Cryptic Taxa [0.03%]
基于系统基因组学和高分辨率X射线断层扫描的隐存物种划分综合途径研究
Kirilee Chaplin,Joanna Sumner,Christy A Hipsley et al.
Kirilee Chaplin et al.
Morphologically cryptic taxa have proved to be a long-standing challenge for taxonomists. Lineages that show strong genomic structuring across the landscape but are phenotypically similar pose a conundrum, with traditional morphological ana...
GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments [0.03%]
鬼影：从异时齐性进化序列比对中恢复历史信号
Stephen M Crotty,Bui Quang Minh,Nigel G Bean et al.
Stephen M Crotty et al.
Molecular sequence data that have evolved under the influence of heterotachous evolutionary processes are known to mislead phylogenetic inference. We introduce the General Heterogeneous evolution On a Single Topology (GHOST) model of sequen...
Graph Splitting: A Graph-Based Approach for Superfamily-Scale Phylogenetic Tree Reconstruction [0.03%]
基于图的超科尺度系统发育树重建方法
Motomu Matsui,Wataru Iwasaki
Motomu Matsui
A protein superfamily contains distantly related proteins that have acquired diverse biological functions through a long evolutionary history. Phylogenetic analysis of the early evolution of protein superfamilies is a key challenge because ...
INSTRAL: Discordance-Aware Phylogenetic Placement Using Quartet Scores [0.03%]
基于四元组评分的 discordance-aware 补完全局比对方法 INSTRAL
Maryam Rabiee,Siavash Mirarab
Maryam Rabiee
Phylogenomic analyses have increasingly adopted species tree reconstruction using methods that account for gene tree discordance using pipelines that require both human effort and computational resources. As the number of available genomes ...
Phylogenomics Uncovers Confidence and Conflict in the Rapid Radiation of Australo-Papuan Rodents [0.03%]
系统基因组学揭示了澳洲-新几内亚鼠类的快速辐射中的自信与冲突
Emily J Roycroft,Adnan Moussalli,Kevin C Rowe
Emily J Roycroft
The estimation of robust and accurate measures of branch support has proven challenging in the era of phylogenomics. In data sets of potentially millions of sites, bootstrap support for bifurcating relationships around very short internal b...
The Origins and Diversification of the Exceptionally Rich Gemsnakes (Colubroidea: Lamprophiidae: Pseudoxyrhophiinae) in Madagascar [0.03%]
马达加斯加特有的丰富珍宝蛇（腹足目：宝石蛇科：伪xyrhophiinae）的起源和多样化
Frank T Burbrink,Sara Ruane,Arianna Kuhn et al.
Frank T Burbrink et al.
Processes leading to spectacular diversity of both form and species on islands have been well-documented under island biogeography theory, where distance from source and island size are key factors determining immigration and extinction res...
The Multispecies Coalescent Over-Splits Species in the Case of Geographically Widespread Taxa [0.03%]
广泛分布类群的多物种谱系合并过度分割物种
E Anne Chambers,David M Hillis
E Anne Chambers
Many recent species delimitation studies rely exclusively on limited analyses of genetic data analyzed under the multispecies coalescent (MSC) model, and results from these studies often are regarded as conclusive support for taxonomic chan...