Evolutionary Sample Size and Consilience in Phylogenetic Comparative Analysis [0.03%]
进化样本大小和系统发育比较分析中的协同一致性
Jacob D Gardner,Chris L Organ
Jacob D Gardner
Phylogenetic comparative methods (PCMs) are commonly used to study evolution and adaptation. However, frequently used PCMs for discrete traits mishandle single evolutionary transitions. They erroneously detect correlated evolution in these ...
A New Method for Integrating Ecological Niche Modeling with Phylogenetics to Estimate Ancestral Distributions [0.03%]
一种将生态位模型与系统发生学结合以估计祖先分布的新方法
Wilson X Guillory,Jason L Brown
Wilson X Guillory
Ancestral range estimation and projection of niche models into the past have both become common in evolutionary studies where the ancient distributions of organisms are in question. However, these methods are hampered by complementary hurdl...
Interrogating Phylogenetic Discordance Resolves Deep Splits in the Rapid Radiation of Old World Fruit Bats (Chiroptera: Pteropodidae) [0.03%]
质询谱系分歧揭示旧大陆果蝠（翼手目：果蝠科）快速辐射中的深层分支关系
Nicolas Nesi,Georgia Tsagkogeorga,Susan M Tsang et al.
Nicolas Nesi et al.
The family Pteropodidae (Old World fruit bats) comprises $>$200 species distributed across the Old World tropics and subtropics. Most pteropodids feed on fruit, suggesting an early origin of frugivory, although several lineages have shifted...
Delayed Adaptive Radiation among New Zealand Stream Fishes: Joint Estimation of Divergence Time and Trait Evolution in a Newly Delineated Island Species Flock [0.03%]
新西兰溪流鱼的延迟适应辐射：新界定岛屿物种群分化时间和性状演化的联合估算
Christine E Thacker,James J Shelley,W Tyler McCraney et al.
Christine E Thacker et al.
Adaptive radiations are generally thought to occur soon after a lineage invades a region offering high levels of ecological opportunity. However, few adaptive radiations beyond a handful of exceptional examples are known, so a comprehensive...
Phylogenomic Analysis of Concatenated Ultraconserved Elements Reveals the Recent Evolutionary Radiation of the Fairy Wrasses (Teleostei: Labridae: Cirrhilabrus) [0.03%]
串联超保守元件的系统基因组学分析揭示拟船鯙属（辐鳍鱼纲：鳚科：Cirrhilabrus）的近期辐射演化
Yi-Kai Tea,Xin Xu,Joseph D DiBattista et al.
Yi-Kai Tea et al.
The fairy wrasses (genus Cirrhilabrus) are among the most successful of the extant wrasse lineages (Teleostei: Labridae), with their 61 species accounting for nearly 10$/%$ of the family. Although species complexes within the genus have bee...
Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data [0.03%]
解析系统基因组数据中基于连接和四元组方法之间的不一致现象
Xing-Xing Shen,Jacob L Steenwyk,Antonis Rokas
Xing-Xing Shen
Topological conflict or incongruence is widespread in phylogenomic data. Concatenation- and coalescent-based approaches often result in incongruent topologies, but the causes of this conflict can be difficult to characterize. We examined in...
QMaker: Fast and Accurate Method to Estimate Empirical Models of Protein Evolution [0.03%]
快速准确估计蛋白质演化经验模型的方法
Bui Quang Minh,Cuong Cao Dang,Le Sy Vinh et al.
Bui Quang Minh et al.
Amino acid substitution models play a crucial role in phylogenetic analyses. Maximum likelihood (ML) methods have been proposed to estimate amino acid substitution models; however, they are typically complicated and slow. In this article, w...
Of Traits and Trees: Probabilistic Distances under Continuous Trait Models for Dissecting the Interplay among Phylogeny, Model, and Data [0.03%]
关于特征和树的概率距离：在连续特征模型下解析系统发育、模型和数据之间的相互作用
Richard H Adams,Heath Blackmon,Michael DeGiorgio
Richard H Adams
Stochastic models of character trait evolution have become a cornerstone of evolutionary biology in an array of contexts. While probabilistic models have been used extensively for statistical inference, they have largely been ignored for th...
Corrigendum to: Phylogenomics of piranhas and pacus (Serrasalmidae) uncovers how dietary convergence and parallelism obfuscate traditional morphological taxonomy [0.03%]
对锯脂鲤科鱼类的系统发生基因组学研究揭示了食性趋同和平行演化如何混淆传统形态分类学
Published Erratum
Systematic biology. 2021 Apr 15;70(3):634. DOI:10.1093/sysbio/syaa104 2021
Impact of Pleistocene Eustatic Fluctuations on Evolutionary Dynamics in Southeast Asian Biodiversity Hotspots [0.03%]
更新世海平面波动对东南亚生物多样性热点地区进化动态的影响
Arni Sholihah,Erwan Delrieu-Trottin,Fabien L Condamine et al.
Arni Sholihah et al.
Pleistocene climatic fluctuations (PCF) are frequently highlighted as important evolutionary engines that triggered cycles of biome expansion and contraction. Although there is ample evidence of the impact of PCF on biodiversity of continen...