Phylogenomics and Historical Biogeography of Seahorses, Dragonets, Goatfishes, and Allies (Teleostei: Syngnatharia): Assessing Factors Driving Uncertainty in Biogeographic Inferences [0.03%]
海马鱼总目（辐鳍鱼纲：海龙目）的系统基因组学和历史生物地理学：评估生物地理推断不确定性的因素
Aintzane Santaquiteria,Alexandre C Siqueira,Emanuell Duarte-Ribeiro et al.
Aintzane Santaquiteria et al.
The charismatic trumpetfishes, goatfishes, dragonets, flying gurnards, seahorses, and pipefishes encompass a recently defined yet extraordinarily diverse clade of percomorph fishes-the series Syngnatharia. This group is widely distributed i...
Species Tree Estimation from Gene Trees by Minimizing Deep Coalescence and Maximizing Quartet Consistency: A Comparative Study and the Presence of Pseudo Species Tree Terraces [0.03%]
通过最小化深层汇合和最大化四联体一致性从基因树估算物种树：比较研究及伪物种树台地的存在性
Ishrat Tanzila Farah,Muktadirul Islam,Kazi Tasnim Zinat et al.
Ishrat Tanzila Farah et al.
Species tree estimation from multilocus data sets is extremely challenging, especially in the presence of gene tree heterogeneity across the genome due to incomplete lineage sorting (ILS). Summary methods have been developed which estimate ...
Six-State Amino Acid Recoding is not an Effective Strategy to Offset Compositional Heterogeneity and Saturation in Phylogenetic Analyses [0.03%]
六状态氨基酸重编码不是用于抵消系统发生分析组成异质性和饱和度的有效策略
Alexandra M Hernandez,Joseph F Ryan
Alexandra M Hernandez
Six-state amino acid recoding strategies are commonly applied to combat the effects of compositional heterogeneity and substitution saturation in phylogenetic analyses. While these methods have been endorsed from a theoretical perspective, ...
Most Genomic Loci Misrepresent the Phylogeny of an Avian Radiation Because of Ancient Gene Flow [0.03%]
由于古基因流，大多数基因组位点错误地表征了一次鸟类辐射的系统发育关系
Dezhi Zhang,Frank E Rheindt,Huishang She et al.
Dezhi Zhang et al.
Phylogenetic trees based on genome-wide sequence data may not always represent the true evolutionary history for a variety of reasons. One process that can lead to incorrect reconstruction of species phylogenies is gene flow, especially if ...
Reconstructing Squamate Biogeography in Afro-Arabia Reveals the Influence of a Complex and Dynamic Geologic Past [0.03%]
重建鳞脚目动物在非洲-阿拉伯地区的生物地理学揭示了复杂而动态的地质历史的影响
Héctor Tejero-Cicuéndez,Austin H Patton,Daniel S Caetano et al.
Héctor Tejero-Cicuéndez et al.
The geographic distribution of biodiversity is central to understanding evolutionary biology. Paleogeographic and paleoclimatic histories often help to explain how biogeographic patterns unfold through time. However, such patterns are also ...
Ultraconserved Elements Improve the Resolution of Difficult Nodes within the Rapid Radiation of Neotropical Sigmodontine Rodents (Cricetidae: Sigmodontinae) [0.03%]
超保守元件提高新热带盲鼠类啮齿动物快速辐射进化树中困难节点的分辨率
Andrés Parada,John Hanson,Guillermo D&#x;Eiía
Andrés Parada
Sigmodontine rodents (Cricetidae, Sigmodontinae) represent the second largest muroid subfamily and the most species-rich group of New World mammals, encompassing above 410 living species and ca. 87 genera. Even with advances on the clarific...
Testing the Utility of Alternative Metrics of Branch Support to Address the Ancient Evolutionary Radiation of Tunas, Stromateoids, and Allies (Teleostei: Pelagiaria) [0.03%]
检验替代分支支持度度量的实用性以解决金枪鱼、旗鱼及其近缘物种(鱼类：Pelagiaria)的古老辐射进化问题
Dahiana Arcila,Lily C Hughes,Bruce Meléndez-Vazquez et al.
Dahiana Arcila et al.
The use of high-throughput sequencing technologies to produce genome-scale data sets was expected to settle some long-standing controversies across the Tree of Life, particularly in areas where short branches occur at deep timescales. Inste...
Inferring the Total-Evidence Timescale of Marattialean Fern Evolution in the Face of Model Sensitivity [0.03%]
基于模型敏感性推测铁角蕨类植物演化全证据时间标尺
Michael R May,Dori L Contreras,Michael A Sundue et al.
Michael R May et al.
Phylogenetic divergence-time estimation has been revolutionized by two recent developments: 1) total-evidence dating (or "tip-dating") approaches that allow for the incorporation of fossils as tips in the analysis, with their phylogenetic a...
The Implications of Interrelated Assumptions on Estimates of Divergence Times and Rates of Diversification [0.03%]
相关假设对分化时间和多样化速率估计的影响
Tom Carruthers,Robert W Scotland
Tom Carruthers
Phylogenies are increasingly being used as a basis to provide insight into macroevolutionary history. Here, we use simulation experiments and empirical analyses to evaluate methods that use phylogenies as a basis to make estimates of diverg...
On Defining and Finding Islands of Trees and Mitigating Large Island Bias [0.03%]
界定和查找树的岛屿以及缓解大规模岛屿偏差问题
Ana Serra Silva,Mark Wilkinson
Ana Serra Silva
How best can we summarize sets of phylogenetic trees? Systematists have relied heavily on consensus methods, but if tree distributions can be partitioned into distinct subsets, it may be helpful to provide separate summaries of these rather...