Are Skyline Plot-Based Demographic Estimates Overly Dependent on Smoothing Prior Assumptions? [0.03%]
基于 skyline 图的群体规模估计是否过于依赖平滑先验假设？
Kris V Parag,Oliver G Pybus,Chieh-Hsi Wu
Kris V Parag
In Bayesian phylogenetics, the coalescent process provides an informative framework for inferring changes in the effective size of a population from a phylogeny (or tree) of sequences sampled from that population. Popular coalescent inferen...
Iker Irisarri,Jürgen F H Strassert,Fabien Burki
Iker Irisarri
The origin of plastids was a major evolutionary event that paved the way for an astonishing diversification of photosynthetic eukaryotes. Plastids originated by endosymbiosis between a heterotrophic eukaryotic host and cyanobacteria, presum...
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life [0.03%]
探究被子植物生命之树的综合系统基因组平台
William J Baker,Paul Bailey,Vanessa Barber et al.
William J Baker et al.
The tree of life is the fundamental biological roadmap for navigating the evolution and properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering plants) are fraught with data gaps, despite their critical rol...
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae) [0.03%]
target enrichment 数据中的直系同源基因分析在大三七（蔷薇科）中鉴定多个古老的多倍体事件
Diego F Morales-Briones,Berit Gehrke,Chien-Hsun Huang et al.
Diego F Morales-Briones et al.
Target enrichment is becoming increasingly popular for phylogenomic studies. Although baits for enrichment are typically designed to target single-copy genes, paralogs are often recovered with increased sequencing depth, sometimes from a si...
OpenTree: A Python Package for Accessing and Analyzing Data from the Open Tree of Life [0.03%]
OpenTree：一个用于访问和分析来自开放生命之树的数据的Python包
Emily Jane Mctavish,Luna Luisa Sánchez-Reyes,Mark T Holder
Emily Jane Mctavish
The Open Tree of Life project constructs a comprehensive, dynamic, and digitally available tree of life by synthesizing published phylogenetic trees along with taxonomic data. Open Tree of Life provides web-service application programming i...
Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs (Occidozyga laevis) [0.03%]
基因流动增加系统发育结构并夸大隐存种的估计：菲律宾广布蛙类（Occidozyga laevis）的一个案例研究
Kin Onn Chan,Carl R Hutter,Perry L Wood et al.
Kin Onn Chan et al.
In cryptic amphibian complexes, there is a growing trend to equate high levels of genetic structure with hidden cryptic species diversity. Typically, phylogenetic structure and distance-based approaches are used to demonstrate the distinctn...
Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae) [0.03%]
化石启示的模型揭示了 walnut family(Juglandaceae)的 boreotropic起源和分歧进化轨迹
Qiuyue Zhang,Richard H Ree,Nicolas Salamin et al.
Qiuyue Zhang et al.
Temperate woody plants in the Northern Hemisphere have long been known to exhibit high species richness in East Asia and North America and significantly lower diversity in Europe, but the causes of this pattern remain debated. Here, we quan...
Ecological Opportunity from Innovation, not Islands, Drove the Anole Lizard Adaptive Radiation [0.03%]
创新带来的生态机会而非岛屿促进了壁虎的适应性辐射
Edward D Burress,Martha M Muñoz
Edward D Burress
Islands are thought to facilitate adaptive radiation by providing release from competition and predation. Anole lizards are considered a classic example of this phenomenon: different ecological specialists ("ecomorphs") evolved in the Carib...
Introgression and Species Delimitation in the Longear Sunfish Lepomis megalotis (Teleostei: Percomorpha: Centrarchidae) [0.03%]
长耳 SUNFISH（Lepomis megalotis）中的 introgression 和物种划分（ TELEOSTEI：PERCOMORPHA：CENTRARCHIDAE）
Daemin Kim,Bruce H Bauer,Thomas J Near
Daemin Kim
Introgression and hybridization are major impediments to genomic-based species delimitation because many implementations of the multispecies coalescent framework assume no gene flow among species. The sunfish genus Lepomis, one of the world...