Detecting and Removing Sample Contamination in Phylogenomic Data: An Example and its Implications for Cicadidae Phylogeny (Insecta: Hemiptera) [0.03%]
测序污染在类虫翅目基因组数据中的检测与清除及其对蝉科系统发育的影响
Christopher L Owen,David C Marshall,Elizabeth J Wade et al.
Christopher L Owen et al.
Contamination of a genetic sample with DNA from one or more nontarget species is a continuing concern of molecular phylogenetic studies, both Sanger sequencing studies and next-generation sequencing studies. We developed an automated pipeli...
Wallacean and Melanesian Islands Promote Higher Rates of Diversification within the Global Passerine Radiation Corvides [0.03%]
华莱士区和美拉尼西亚群岛促进全球雀形目辐射枝脉鸦科更高的分化速率
Jenna M McCullough,Carl H Oliveros,Brett W Benz et al.
Jenna M McCullough et al.
The complex island archipelagoes of Wallacea and Melanesia have provided empirical data behind integral theories in evolutionary biology, including allopatric speciation and island biogeography. Yet, questions regarding the relative impact ...
Protracted Speciation under the State-Dependent Speciation and Extinction Approach [0.03%]
基于状态依赖的物种分化与灭绝模型下的长期物种分化过程
Xia Hua,Tyara Herdha,Conrad J Burden
Xia Hua
How long does speciation take? The answer to this important question in evolutionary biology lies in the genetic difference not only among species, but also among lineages within each species. With the advance of genome sequencing in non-mo...
Macroevolutionary Analyses Provide New Evidence of Phasmid Wings Evolution as a Reversible Process [0.03%]
宏进化分析为䗛翅可逆进化的假说提供新证据
Giobbe Forni,Jacopo Martelossi,Pablo Valero et al.
Giobbe Forni et al.
The concept that complex ancestral traits can never be recovered after their loss is still widely accepted, despite phylogenetic and molecular approaches suggest instances where phenotypes may have been lost throughout the evolutionary hist...
Species Tree Estimation and the Impact of Gene Loss Following Whole-Genome Duplication [0.03%]
物种树估计及全基因组重复后的基因丢失的影响
Haifeng Xiong,Danying Wang,Chen Shao et al.
Haifeng Xiong et al.
Whole-genome duplication (WGD) occurs broadly and repeatedly across the history of eukaryotes and is recognized as a prominent evolutionary force, especially in plants. Immediately following WGD, most genes are present in two copies as para...
The Occurrence Birth-Death Process for Combined-Evidence Analysis in Macroevolution and Epidemiology [0.03%]
宏进化和流行病学中结合证据分析的事件出生死亡过程
Jérémy Andréoletti,Antoine Zwaans,Rachel C M Warnock et al.
Jérémy Andréoletti et al.
Phylodynamic models generally aim at jointly inferring phylogenetic relationships, model parameters, and more recently, the number of lineages through time, based on molecular sequence data. In the fields of epidemiology and macroevolution,...
Target Enrichment and Extensive Population Sampling Help Untangle the Recent, Rapid Radiation of Oenothera Sect. Calylophus [0.03%]
目标富集和广泛人群抽样有助于解开Oenothera Sect。Calylophus最近的快速辐射现象
Benjamin J Cooper,Michael J Moore,Norman A Douglas et al.
Benjamin J Cooper et al.
Oenothera sect. Calylophus is a North American group of 13 recognized taxa in the evening primrose family (Onagraceae) with an evolutionary history that may include independent origins of bee pollination, edaphic endemism, and permanent tra...
Bayesian Analyses of Comparative Data with the Ornstein-Uhlenbeck Model: Potential Pitfalls [0.03%]
奥伦斯坦-乌伦贝克模型在比较数据的贝叶斯分析中的潜在缺陷
Josselin Cornuault
Josselin Cornuault
The Ornstein-Uhlenbeck (OU) model is widely used in comparative phylogenetic analyses to study the evolution of quantitative traits. It has been applied to various purposes, including the estimation of the strength of selection or ancestral...
Fast Likelihood Calculations for Automatic Identification of Macroevolutionary Rate Heterogeneity in Continuous and Discrete Traits [0.03%]
快速似然计算方法在连续和离散性状宏观进化率异质性自动识别中的应用
Michael C Grundler,Daniel L Rabosky,Felipe Zapata
Michael C Grundler
Understanding phenotypic disparity across the tree of life requires identifying where and when evolutionary rates change on phylogeny. A primary methodological challenge in macroevolution is therefore to develop methods for accurate inferen...
Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark Taxa [0.03%]
面向大规模综合分类学（LIT）：解决黑暗分类单元的数据难题
Emily Hartop,Amrita Srivathsan,Fredrik Ronquist et al.
Emily Hartop et al.
New, rapid, accurate, scalable, and cost-effective species discovery and delimitation methods are needed for tackling "dark taxa," here defined as groups for which $