Handling Logical Character Dependency in Phylogenetic Inference: Extensive Performance Testing of Assumptions and Solutions Using Simulated and Empirical Data [0.03%]
处理系统发生推断中的逻辑字符依赖性：使用模拟和实证数据对假设和解决方案进行广泛性能测试
Tiago R Simões,Oksana V Vernygora,Bruno A S de Medeiros et al.
Tiago R Simões et al.
Logical character dependency is a major conceptual and methodological problem in phylogenetic inference of morphological data sets, as it violates the assumption of character independence that is common to all phylogenetic methods. It is mo...
Ben Bettisworth,Stephen A Smith,Alexandros Stamatakis
Ben Bettisworth
Computing ancestral ranges via the Dispersion Extinction and Cladogensis (DEC) model of biogeography is characterized by an exponential number of states relative to the number of regions considered. This is because the DEC model requires co...
A 4-lineage Statistical Suite to Evaluate the Support of Large-Scale Retrotransposon Insertion Data to Reconstruct Evolutionary Trees [0.03%]
用于评估大规模反转录转座子插入数据支持重建进化树的四系谱统计软件包
Gennady Churakov,Andrej Kuritzin,Konstantin Chukharev et al.
Gennady Churakov et al.
Retrophylogenomics makes use of genome-wide retrotransposon presence/absence insertion patterns to resolve questions in phylogeny and population genetics. In the genomics era, evaluating high-throughput data requires the associated developm...
Impact of Phylogenetic Tree Completeness and Mis-specification of Sampling Fractions on Trait Dependent Diversification Models [0.03%]
系统树完整度和采样比例误设对性状依赖分化模型的影响
Poppy Mynard,Adam C Algar,Lesley T Lancaster et al.
Poppy Mynard et al.
Understanding the origins of diversity and the factors that drive some clades to be more diverse than others are important issues in evolutionary biology. Sophisticated SSE (state-dependent speciation and extinction) models provide insights...
Linking Ecological Specialization to Its Macroevolutionary Consequences: An Example with Passerine Nest Type [0.03%]
将生态专业化与其宏观进化结果联系起来：以雀形目鸟巢类型为例
Rosana Zenil-Ferguson,Jay P McEntee,J Gordon Burleigh et al.
Rosana Zenil-Ferguson et al.
A long-standing hypothesis in evolutionary biology is that the evolution of resource specialization can lead to an evolutionary dead end, where specialists have low diversification rates and limited ability to evolve into generalists. In re...
Model Selection Performance in Phylogenetic Comparative Methods Under Multivariate Ornstein-Uhlenbeck Models of Trait Evolution [0.03%]
在多变量奥恩斯坦-乌hlenbeck模型下的性状进化中，系统发育比较方法中的模型选择性能
Krzysztof Bartoszek,Jesualdo Fuentes-González,Venelin Mitov et al.
Krzysztof Bartoszek et al.
The advent of fast computational algorithms for phylogenetic comparative methods allows for considering multiple hypotheses concerning the co-adaptation of traits and also for studying if it is possible to distinguish between such models ba...
Performance of Akaike Information Criterion and Bayesian Information Criterion in Selecting Partition Models and Mixture Models [0.03%]
选择划分模型和混合模型中Akaike信息标准和Bayesian信息标准的性能
Qin Liu,Michael A Charleston,Shane A Richards et al.
Qin Liu et al.
In molecular phylogenetics, partition models and mixture models provide different approaches to accommodating heterogeneity in genomic sequencing data. Both types of models generally give a superior fit to data than models that assume the p...
Phylogenomics Reveals that Mitochondrial Capture and Nuclear Introgression Characterize Skua Species Proposed to be of Hybrid Origin [0.03%]
系统基因组学表明线粒体捕获和细胞核渗入表征了杂交起源的贼鸥物种
Else K Mikkelsen,Jason T Weir
Else K Mikkelsen
The skuas and jaegers (Stercorariidae) are an enigmatic family of seven seabird species that breed at Arctic and Antarctic latitudes. The phylogenetic relationships amongst the species have been controversial, with one of the biggest enigma...
Phylogenomics of the Ancient and Species-Depauperate Gars Tracks 150 Million Years of Continental Fragmentation in the Northern Hemisphere [0.03%]
古老而物种匮乏的鱼漂目的系统基因组学追踪了北方大陆板块1.5亿年的断裂史
Chase Doran Brownstein,Liandong Yang,Matt Friedman et al.
Chase Doran Brownstein et al.
Reconstructing deep-time biogeographic histories is limited by the comparatively recent diversification of most extant lineages. Ray-finned fishes, which include nearly half of all living vertebrates, are no exception. Although most lineage...
Power of Bayesian and Heuristic Tests to Detect Cross-Species Introgression with Reference to Gene Flow in the Tamias quadrivittatus Group of North American Chipmunks [0.03%]
贝叶斯检验和启发式检验在检测物种间渗入及以北美松鼠Tamias quadrivittatus群为例的基因流中的效用分析
Jiayi Ji,Donavan J Jackson,Adam D Leaché et al.
Jiayi Ji et al.
In the past two decades, genomic data have been widely used to detect historical gene flow between species in a variety of plants and animals. The Tamias quadrivittatus group of North America chipmunks, which originated through a series of ...