L Francisco Henao-Diaz,Matt Pennell
L Francisco Henao-Diaz
Evolutionary dynamics operating across deep time leave footprints in the shapes of phylogenetic trees. For the last several decades, researchers have used increasingly large and robust phylogenies to study the evolutionary history of indivi...
Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations [0.03%]
基于matOptimize的在线系统发生学分析与从头开始和最大似然实现相比可生成相同的结果且适用于大规模冠状病毒系统发育树的构建更加高效
Alexander M Kramer,Bryan Thornlow,Cheng Ye et al.
Alexander M Kramer et al.
Phylogenetics has been foundational to SARS-CoV-2 research and public health policy, assisting in genomic surveillance, contact tracing, and assessing emergence and spread of new variants. However, phylogenetic analyses of SARS-CoV-2 have o...
A Cautionary Note on "A Cautionary Note on the Use of Ornstein Uhlenbeck Models in Macroevolutionary Studies" [0.03%]
对宏观进化研究中使用奥恩斯坦-Uhlenbeck模型的警告的反思
Mark Grabowski,Jason Pienaar,Kjetil L Voje et al.
Mark Grabowski et al.
Models based on the Ornstein-Uhlenbeck process have become standard for the comparative study of adaptation. Cooper et al. (2016) have cast doubt on this practice by claiming statistical problems with fitting Ornstein-Uhlenbeck models to co...
PARNAS: Objectively Selecting the Most Representative Taxa on a Phylogeny [0.03%]
PARNAS：在系统树上客观选择最具代表性的分类单元
Alexey Markin,Sanket Wagle,Siddhant Grover et al.
Alexey Markin et al.
The use of next-generation sequencing technology has enabled phylogenetic studies with hundreds of thousands of taxa. Such large-scale phylogenies have become a critical component in genomic epidemiology in pathogens such as SARS-CoV-2 and ...
Hybridization and Transgressive Evolution Generate Diversity in an Adaptive Radiation of Anolis Lizards [0.03%]
杂交和越界进化生成安乐蜥适应辐射中的多样性
Guinevere O U Wogan,Michael L Yuan,D Luke Mahler et al.
Guinevere O U Wogan et al.
Interspecific hybridization may act as a major force contributing to the evolution of biodiversity. Although generally thought to reduce or constrain divergence between 2 species, hybridization can, paradoxically, promote divergence by incr...
Increasing Information Content and Diagnosability in Family-Level Classifications [0.03%]
提高家庭水平分类的信息量和诊断性
Matjaž Kuntner,Klemen Čandek,Matjaž Gregorič et al.
Matjaž Kuntner et al.
Higher-level classifications often must account for monotypic taxa representing depauperate evolutionary lineages and lacking synapomorphies of their better-known, well-defined sister clades. In a ranked (Linnean) or unranked (phylogenetic)...
The ClaDS rate-heterogeneous birth-death prior for full phylogenetic inference in BEAST2 [0.03%]
用于BEAST2完整谱系推断的ClaDS异质率出生-死亡先验分布
Joëlle Barido-Sottani,Hélène Morlon
Joëlle Barido-Sottani
Bayesian phylogenetic inference requires a tree prior, which models the underlying diversification process that gives rise to the phylogeny. Existing birth-death diversification models include a wide range of features, for instance, lineage...
Phylogenomic Analyses Reveal an Allopolyploid Origin of Core Didymocarpinae (Gesneriaceae) Followed by Rapid Radiation [0.03%]
系统基因组学分析揭示山茶花属核心短柱花组（报春花科）为多倍体起源并快速分化
Lihua Yang,A J Harris,Fang Wen et al.
Lihua Yang et al.
Allopolyploid plants have long been regarded as possessing genetic advantages under certain circumstances due to the combined effects of their hybrid origins and duplicated genomes. However, the evolutionary consequences of allopolyploidy i...
Consilience Across Multiple, Independent Genomic Data Sets Reveals Species in a Complex with Limited Phenotypic Variation [0.03%]
多个独立基因组数据集的共识一致性揭示了一个表型变异有限的物种复合体中的物种多样性
Lara M Wootton,Félix Forest,G Anthony Verboom
Lara M Wootton
Species delimitation in the genomic era has focused predominantly on the application of multiple analytical methodologies to a single massive parallel sequencing (MPS) data set, rather than leveraging the unique but complementary insights p...
Effect of Host-Switching on the Ecological and Evolutionary Patterns of Parasites [0.03%]
宿主转换对寄生虫生态和演化模式的影响
Elvira D&#x;Bastiani,Débora Princepe,Flavia M D Marquitti et al.
Elvira D&#x;Bastiani et al.
Speciation via host-switching is a macroevolutionary process that emerges from a microevolutionary dynamic where individual parasites switch hosts, establish a new association, and reduce reproductive contact with the original parasite line...