Geogenomic Predictors of Genetree Heterogeneity Explain Phylogeographic and Introgression History: A Case Study in an Amazonian Bird (Thamnophilus aethiops) [0.03%]
基于地基因组的预测揭示了系统发育地理学和杂交渐渗历史：一种亚马逊雀鸟（Thamnophilus aethiops）案例研究
Lukas J Musher,Glaucia Del-Rio,Rafael S Marcondes et al.
Lukas J Musher et al.
Can knowledge about genome architecture inform biogeographic and phylogenetic inference? Selection, drift, recombination, and gene flow interact to produce a genomic landscape of divergence wherein patterns of differentiation and genealogy ...
Introgression Underlies Phylogenetic Uncertainty But Not Parallel Plumage Evolution in a Recent Songbird Radiation [0.03%]
Introgression 不是 recent songbird radiation 中羽色平行进化的基础，但却是其产生谱系不确定性的原因
Loïs Rancilhac,Erik D Enbody,Rebecca Harris et al.
Loïs Rancilhac et al.
Instances of parallel phenotypic evolution offer great opportunities to understand the evolutionary processes underlying phenotypic changes. However, confirming parallel phenotypic evolution and studying its causes requires a robust phyloge...
Robustness of Felsenstein's Versus Transfer Bootstrap Supports With Respect to Taxon Sampling [0.03%]
区系取样对芬森斯坦法与转移靴轨法支点稳健性的影响力比较研究
Paul Zaharias,Frédéric Lemoine,Olivier Gascuel
Paul Zaharias
The bootstrap method is based on resampling sequence alignments and re-estimating trees. Felsenstein's bootstrap proportions (FBP) are the most common approach to assess the reliability and robustness of sequence-based phylogenies. However,...
Fast and Accurate Maximum-Likelihood Estimation of Multi-Type Birth-Death Epidemiological Models from Phylogenetic Trees [0.03%]
基于系统发育树的流行病学模型中多类型出生死亡极大似然估计的快速精确化方法研究
Anna Zhukova,Frédéric Hecht,Yvon Maday et al.
Anna Zhukova et al.
Multi-type birth-death (MTBD) models are phylodynamic analogies of compartmental models in classical epidemiology. They serve to infer such epidemiological parameters as the average number of secondary infections Re and the infectious time ...
Cophylogeny Reconstruction Allowing for Multiple Associations Through Approximate Bayesian Computation [0.03%]
通过近似贝叶斯推断允许多重关联的协同谱系重建
Blerina Sinaimeri,Laura Urbini,Marie-France Sagot et al.
Blerina Sinaimeri et al.
Phylogenetic tree reconciliation is extensively employed for the examination of coevolution between host and symbiont species. An important concern is the requirement for dependable cost values when selecting event-based parsimonious reconc...
Summary Tests of Introgression Are Highly Sensitive to Rate Variation Across Lineages [0.03%]
introgression的摘要测试对谱系间速率变化非常敏感
Lauren E Frankel,Cécile Ané
Lauren E Frankel
The evolutionary implications and frequency of hybridization and introgression are increasingly being recognized across the tree of life. To detect hybridization from multi-locus and genome-wide sequence data, a popular class of methods are...
Two Notorious Nodes: A Critical Examination of Relaxed Molecular Clock Age Estimates of the Bilaterian Animals and Placental Mammals [0.03%]
两种声名狼藉的节点：关于两侧对称动物和胎盘哺乳动物放任分子钟法年代测定的一项批判性研究
Graham E Budd,Richard P Mann
Graham E Budd
The popularity of relaxed clock Bayesian inference of clade origin timings has generated several recent publications with focal results considerably older than the fossils of the clades in question. Here, we critically examine two such clad...
Evaluating the Accuracy of Methods for Detecting Correlated Rates of Molecular and Morphological Evolution [0.03%]
评估检测分子和形态进化相关速率方法准确性的准确性
Yasmin Asar,Hervé Sauquet,Simon Y W Ho
Yasmin Asar
Determining the link between genomic and phenotypic change is a fundamental goal in evolutionary biology. Insights into this link can be gained by using a phylogenetic approach to test for correlations between rates of molecular and morphol...
Skyline Fossilized Birth-Death Model is Robust to Violations of Sampling Assumptions in Total-Evidence Dating [0.03%]
天际化石出生死亡模型在总证据 dating 中违反采样假设时具有鲁棒性
Chi Zhang,Fredrik Ronquist,Tanja Stadler
Chi Zhang
Several total-evidence dating studies under the fossilized birth-death (FBD) model have produced very old age estimates, which are not supported by the fossil record. This phenomenon has been termed "deep root attraction (DRA)." For two spe...
The Cauchy Process on Phylogenies: A Tractable Model for Pulsed Evolution [0.03%]
Caulky过程在系统发育中的应用：脉冲进化的一种可处理模型
Paul Bastide,Gilles Didier
Paul Bastide
Phylogenetic comparative methods use random processes, such as the Brownian Motion, to model the evolution of continuous traits on phylogenetic trees. Growing evidence for non-gradual evolution motivated the development of complex models, o...