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Hai Chen,Jingmin Shu,Rekha Mudappathi et al. Hai Chen et al.
Intratumor heterogeneity arises from ongoing somatic evolution complicating cancer diagnosis, prognosis, and treatment. Here we present TEATIME (es t imating e volution a ry events t hrough s i ngle-ti m epoint s e quencing), a novel comput...
Philip Falk,Sofie Olsson Hau,Hedda Jacobsen et al. Philip Falk et al.
Background: Malignancies of the liver and bile ducts are associated with high recurrence rates after surgery and poor prognosis when disseminated. Medical treatment has been improved in recent years, with chemotherapy, ta...
Tongwu Zhang,Jian Sang,Phuc H Hoang et al. Tongwu Zhang et al.
Most solid tumors harbor somatic mutations attributed to off-target activities of APOBEC3A (A3A) and/or APOBEC3B (A3B). However, how APOBEC3A/B enzymes affect tumor evolution in the presence of exogenous mutagenic processes is largely unkno...
Haiqi Lu,Zelin Lu,Yufei Wang et al. Haiqi Lu et al.
The APOBEC (Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like) family of cytidine deaminases has emerged as pivotal a contributor to genomic instability and adaptive immunity through DNA/RNA editing. Accumulating evidence und...
Vasiliki Liaki,Blanca Rosas-Perez,Carmen Guerra Vasiliki Liaki
Pancreatic Ductal Adenocarcinoma (PDAC) belongs to the types of cancer with the highest lethality. It is also remarkably chemoresistant to the few available cytotoxic therapeutic options. PDAC is characterized by limited mutational heteroge...
Ying Wu,Fan Zhang,Furong Du et al. Ying Wu et al.
Malignant tumors notably decrease life expectancy. Despite advances in cancer diagnosis and treatment, the mechanisms underlying tumorigenesis, progression and drug resistance have not been fully elucidated. An emerging method to study tumo...
Kun Wang,Zhaolian Lu,Zeqi Yao et al. Kun Wang et al.
Phylodynamic inference (PI) quantifies population dynamics and evolutionary trajectories using phylogenetic trees. Single-cell lineage tracing enables phylogenetic tree reconstruction for thousands of cells in multicellular organisms, facil...
Benjamin B Morris,Simon Heeke,Yuanxin Xi et al. Benjamin B Morris et al.
Introduction: A hallmark of small cell lung cancer (SCLC) is its recalcitrance to therapy. While most SCLCs respond to frontline therapy, resistance inevitably develops. Identifying phenotypes potentiating chemoresistance...
Gianmaria Miolo,Giovanni Canil,Maurizio Polano et al. Gianmaria Miolo et al.
Ovarian cancer (OC) is a highly heterogeneous malignancy, often characterized by complex genomic alterations that drive tumor progression and therapy resistance. In this paper, we report a novel de novo BRCA2 germline variant NM_000059.3:c....
Justine Boutry,Océane Rieu,Lena Guimard et al. Justine Boutry et al.
While host phenotypic manipulation by parasites is a widespread phenomenon, whether tumors, which can be likened to parasite entities, can also manipulate their hosts is not known. Theory predicts that this should nevertheless be the case, ...
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