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Information sciences. 2024 May:666:120440. doi: 10.1016/j.ins.2024.120440 N/A0.02024

An optimal Bayesian intervention policy in response to unknown dynamic cell stimuli

应对未知动态细胞刺激的最优贝叶斯干预政策 翻译改进

Seyed Hamid Hosseini  1, Mahdi Imani  1

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  • 1 Northeastern University, 360 Huntington Ave, Boston, MA, 02115, United States of America.
  • DOI: 10.1016/j.ins.2024.120440 PMID: 39464381

    摘要 翻译

    Interventions in gene regulatory networks (GRNs) aim to restore normal functions of cells experiencing abnormal behavior, such as uncontrolled cell proliferation. The dynamic, uncertain, and complex nature of cellular processes poses significant challenges in determining the best interventions. Most existing intervention methods assume that cells are unresponsive to therapies, resulting in stationary and deterministic intervention solutions. However, cells in unhealthy conditions can dynamically respond to therapies through internal stimuli, leading to the recurrence of undesirable conditions. This paper proposes a Bayesian intervention policy that adaptively responds to cell dynamic responses according to the latest available information. The GRNs are modeled using a Boolean network with perturbation (BNp), and the fight between the cell and intervention is modeled as a two-player zero-sum game. Assuming an incomplete knowledge of cell stimuli, a recursive approach is developed to keep track of the posterior distribution of cell responses. The proposed Bayesian intervention policy takes action according to the posterior distribution and a set of Nash equilibrium policies associated with all possible cell responses. Analytical results demonstrate the superiority of the proposed intervention policy against several existing intervention techniques. Meanwhile, the performance of the proposed policy is investigated through comprehensive numerical experiments using the p53-MDM2 negative feedback loop regulatory network and melanoma network. The results demonstrate the empirical convergence of the proposed policy to the optimal Nash equilibrium policy.

    Keywords: Bayesian intervention; Boolean networks; Gene regulatory networks; Nash equilibrium; Two-player zero-sum game.

    Keywords:Bayesian intervention policy; Dynamic cell stimuli; Optimal policy

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    期刊名:Information sciences

    缩写:INFORM SCIENCES

    ISSN:0020-0255

    e-ISSN:1872-6291

    IF/分区:0.0/N/A

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