DNA-encoded library technology grants access to nearly infinite opportunities to explore the chemical structure space for drug discovery. Successful navigation depends on the design and synthesis of libraries with appropriate physicochemical properties (PCPs) and structural diversity while aligning with practical considerations. To this end, we analyze combinatorial library design constraints including the number of chemistry cycles, bond construction strategies, and building block (BB) class selection in pursuit of ideal library designs. We compare two-cycle library designs (amino acid + carboxylic acid, primary amine + carboxylic acid) in the context of PCPs and chemical space coverage, given different BB selection strategies and constraints. We find that broad availability of amines and acids is essential for enabling the widest exploration of chemical space. Surprisingly, cost is not a driving factor, and virtually, the same chemical space can be explored with "budget" BBs.
Journal of chemical information and modeling. 2024 Jun 24;64(12):4661-4672. doi: 10.1021/acs.jcim.4c00232 Q15.32025
Building Block-Centric Approach to DNA-Encoded Library Design
面向DNA编码库设计的构建模块中心法 翻译改进
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DOI: 10.1021/acs.jcim.4c00232 PMID: 38860710
摘要 Ai翻译
Keywords:dna-encoded library
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