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bioRxiv : the preprint server for biology. 2024 Apr 11:2024.04.10.588883. doi: 10.1101/2024.04.10.588883

A narrow ratio of nucleic acid to SARS-CoV-2 N-protein enables phase separation

适量的核糖核酸与SARS-CoV-2 N蛋白的比例可以实现相分离现象 翻译改进

Patrick M Laughlin  1, Kimberly Young  1, Giovanni Gonzalez-Gutierrez  1, Joseph C Y Wang  2, Adam Zlotnick  1

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作者单位

  • 1 Department of Molecular and Cellular Biochemistry, Indiana University.
  • 2 Department of Microbiology and Immunology, Pennsylvania State University College of Medicine.
  • DOI: 10.1101/2024.04.10.588883 PMID: 38645044

    摘要 Ai翻译

    SARS-CoV-2 Nucleocapsid protein (N) is a viral structural protein that packages the 30kb genomic RNA inside virions and forms condensates within infected cells through liquid-liquid phase separation (LLPS). N, in both soluble and condensed forms, has accessory roles in the viral life cycle including genome replication and immunosuppression. The ability to perform these tasks depends on phase separation and its reversibility. The conditions that stabilize and destabilize N condensates and the role of N-N interactions are poorly understood. We have investigated LLPS formation and dissolution in a minimalist system comprised of N protein and an ssDNA oligomer just long enough to support assembly. The short oligo allows us to focus on the role of N-N interaction. We have developed a sensitive FRET assay to interrogate LLPS assembly reactions from the perspective of the oligonucleotide. We find that N alone can form oligomers but that oligonucleotide enables their assembly into a three-dimensional phase. At a ~1:1 ratio of N to oligonucleotide LLPS formation is maximal. We find that a modest excess of N or of nucleic acid causes the LLPS to break down catastrophically. Under the conditions examined here assembly has a critical concentration of about 1 μM. The responsiveness of N condensates to their environment may have biological consequences. A better understanding of how nucleic acid modulates N-N association will shed light on condensate activity and could inform antiviral strategies targeting LLPS.

    Keywords:nucleic acid; SARS-CoV-2 N-protein; phase separation

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